Sediminispirochaeta smaragdinae: Spirs_1372
Help
Entry
Spirs_1372 CDS
T01287
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ssm
Sediminispirochaeta smaragdinae
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssm03016
]
Spirs_1372
Enzymes [BR:
ssm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Spirs_1372
Transfer RNA biogenesis [BR:
ssm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Spirs_1372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
ADK80499
UniProt:
E1R477
LinkDB
All DBs
Position
complement(1459143..1459997)
Genome browser
AA seq
284 aa
AA seq
DB search
MNEHIRFLDNDQATAAWLDDIKARGVREIAVDIEGEFNLHRYGEHLCLVQVWDGEVLAIV
DPLVVDLALVREIFESGSFRKIVYDCSSDRTLLYRRYGIHFNEVCDLMPAVVLLDFQKKG
LASVLSSVLHIEEKPKKKFQQYDWMSRPIDADALEYAAADVLHLFTLKEELFKRLEEEGL
SDEYERQNSEVSSRPIPKEGTPGLLKKKRFLCMPKHGKECFLRLFSIRDEYARELDLPPN
RVVSNEELFLLVASRMQPNGIRVPKRMHPSQAQELRHRFTEVLN
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagcatattcggtttcttgacaatgaccaggcaactgctgcctggcttgatgat
atcaaggcaagaggagttcgcgagatcgccgtggacatcgagggagagttcaacctccac
cgctacggtgagcatctttgcctggtgcaggtctgggacggggaagttcttgccattgtc
gatcctttggtcgtggaccttgccctggtcagggagatcttcgagtccggatccttccga
aagattgtctatgattgcagcagcgacagaaccctgctctatcgaaggtacggtatccac
ttcaacgaggtgtgcgacctcatgcctgcggtggttctgcttgattttcagaagaagggg
cttgcttcggtgctctcttcggttctgcatatcgaggaaaagccaaagaaaaagtttcag
cagtacgattggatgagccgtcccatcgatgccgatgctttggaatatgcggccgccgat
gtgcttcaccttttcacgcttaaggaggagcttttcaagcgcctggaagaagaggggctc
agcgatgagtacgagcggcaaaacagcgaggtaagcagccggccgatcccgaaagagggc
actccggggcttctcaaaaagaagcgttttctctgcatgccgaaacatggcaaagagtgc
tttttacgtcttttttccatacgggatgaatacgcacgtgagcttgatctgccgcccaac
agggtggtctcaaacgaggagctctttctgcttgtcgcttctcgaatgcaaccgaacggg
atcagggtgccgaaaaggatgcatccgagtcaggcacaggagcttcgccaccgcttcaca
gaggtcttgaactaa
DBGET
integrated database retrieval system
