Sediminispirochaeta smaragdinae: Spirs_1516
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Entry
Spirs_1516 CDS
T01287
Name
(GenBank) MiaB-like tRNA modifying enzyme
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase [EC:
2.8.4.5
]
Organism
ssm
Sediminispirochaeta smaragdinae
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssm03016
]
Spirs_1516
Enzymes [BR:
ssm01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
Spirs_1516
Transfer RNA biogenesis [BR:
ssm03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
Spirs_1516
Prokaryotic type
Methylthiotransferases
Spirs_1516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
RIM2a_ZnF
Motif
Other DBs
NCBI-ProteinID:
ADK80643
UniProt:
E1R5M8
LinkDB
All DBs
Position
1626996..1628357
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AA seq
453 aa
AA seq
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MRVSFFTLGCKLNQSESEALATAFGRRGFSLVPPSAKGKAEVFVVNSCTVTSKAEQKARR
MIRSFARNNPLSVVLVTGCYAQMDPDQVAALGENVVVLPLSAKASILDLPEFLESAAGGY
TLLDAVQSFAREKSAAAFAGDPSASDRFRFEISGAEKSGRSRGFLKIQDGCDNACTYCRV
RLARGPSVSLASSEVLRRAAALADEGFGEIVLTGVNLTAWQEGDLRFADLLALMTSDSRA
YRIRLSSTEPDAIDEKLASAASSPRVRPHFHLPVQSGSDTVLASVGRHYTADDVLRAVAL
LRKAKEDPFLAADIIVGLPGESDADFEATLSLVERCGFAHIHAFPFSPRPGTPLYTARGR
VPERIAAERMVEIGRLSSQLHASFVARRAGSQEEAVIERLPENGQALVLTDRYLHLPCDA
IPPSEKRGDLCRVLLDYEPDSESLRATFIQEIK
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtctctttctttaccctcggctgtaaactcaatcagagtgagagtgaggccctg
gcgaccgccttcggacgccggggtttttctttagtccctccttccgcaaaaggaaaggcc
gaagtctttgtggtgaatagctgtaccgttaccagtaaggccgaacagaaggcccggaga
atgatacgctcctttgccagaaataatcccttgtcggtggttcttgtcaccggctgctat
gcccagatggatcccgatcaggttgccgcccttggcgagaatgtggttgtgctgcccctc
tctgcgaaggcctcgatccttgatttgccagaattccttgaaagtgccgccggcggctat
acccttctggatgcggtgcaaagctttgcccgggaaaaaagtgctgcggcattcgccggc
gacccttcggcttccgatcgcttccgctttgagatctccggggccgaaaaatcgggacgg
agcaggggctttctcaaaatccaggatggctgcgacaatgcatgtacctattgtcgggta
cgtctcgcccgggggccctcggtttcgcttgcttcttccgaggtcctgcggcgtgcagca
gccctcgcagacgagggcttcggcgaaattgtactaaccggtgttaatcttactgcttgg
caggagggggatctccgctttgccgatcttcttgccctcatgacatctgattcccgtgct
tatcgcatccgtctctccagtaccgaacccgatgccattgatgagaagcttgcctcagcc
gcgtcttctcccagggtacgcccccacttccatcttcccgttcaaagcggatccgatacc
gttctcgcttccgtgggaaggcactacaccgcagacgatgttctgcgcgccgtagcgctg
cttcgaaaagccaaagaagacccattccttgctgccgacattatcgtcggtcttcccgga
gagagcgatgccgactttgaggcaaccctttctcttgtcgaacgctgcggattcgcccac
atccacgcctttccctttagcccccgtccgggaacacccctctatacggcccgggggagg
gtccccgagcgaattgccgccgagaggatggtggaaatcggccgactttcttcccaactt
catgcatcttttgttgccagacgggcaggaagccaggaagaggccgtcattgaacggctg
cccgagaatggtcaggctctggtgctgaccgaccgctatcttcaccttccctgcgatgcc
attcctccatccgaaaaacggggcgatctctgtcgtgtgcttctcgactatgagcctgat
tcggaatcgttgagggcaacatttattcaggaaatcaaataa
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