Sediminispirochaeta smaragdinae: Spirs_1651
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Entry
Spirs_1651 CDS
T01287
Name
(GenBank) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
ssm
Sediminispirochaeta smaragdinae
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssm03016
]
Spirs_1651
Enzymes [BR:
ssm01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
Spirs_1651
Transfer RNA biogenesis [BR:
ssm03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Spirs_1651
Prokaryotic type
Spirs_1651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
Motif
Other DBs
NCBI-ProteinID:
ADK80778
UniProt:
E1R613
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All DBs
Position
1767587..1768330
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AA seq
247 aa
AA seq
DB search
MIVAYDGRKFSGWQVQREDRTVQGVIEAALESMEKQKVRVFAAGRTDSGVHARGQVVHFD
TSLSSIEADKFAPALNAILPADVRIVGSYAVPDDFHARYSAKARSYRYFLYPGVCVSPLL
RPYCYARRSLPSIGALNRAVSPLLGSHDFSSFSASGDPSPSKVRVIYQAVFLQHRGMIEF
RITGNAFLWRMVRSIVGTALEVASAEEPARAMRLILDEKDRSLAGTTAPARGLFFWRVHY
TMEQLYG
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgatcgttgcctatgacggaagaaaattttccggatggcaggtccaaagggaggacaga
accgttcagggggttattgaggcggccctggagtccatggagaagcaaaaggtgagggtg
ttcgccgccggccgtaccgattcgggggtccacgcccggggccaggtcgtccatttcgat
acgagcctttcctcaattgaagcggataaattcgctcctgctttgaacgccatcctgcct
gccgacgtccgtattgtcggctcctatgccgttcccgatgattttcatgcccgctactct
gcgaaggctcgaagttatcgctatttcctttacccgggagtttgcgtttccccgctcctg
cgcccctattgctatgcccgtaggtccctgccgtccattggggccctcaacagggctgtc
tctcctttattgggcagccatgatttttctagcttttccgcatcaggtgatccctcgccc
tcaaaggtcagggtgatctatcaggcggttttcctgcagcataggggtatgatagagttt
agaataacgggaaacgccttcctgtggcgtatggttcgttcgattgtcggaaccgccctt
gaggtggcttctgccgaggagcctgctcgagccatgaggctcattcttgatgagaaggat
cggagcctcgccggtacgactgccccggcgagggggctttttttctggcgggttcattac
accatggagcagctttatggatga
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