Sediminispirochaeta smaragdinae: Spirs_2267
Help
Entry
Spirs_2267 CDS
T01287
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
ssm
Sediminispirochaeta smaragdinae
Pathway
ssm00061
Fatty acid biosynthesis
ssm00071
Fatty acid degradation
ssm01100
Metabolic pathways
ssm01212
Fatty acid metabolism
ssm02024
Quorum sensing
ssm04146
Peroxisome
Module
ssm_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Spirs_2267
00071 Fatty acid degradation
Spirs_2267
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Spirs_2267
09145 Cellular community - prokaryotes
02024 Quorum sensing
Spirs_2267
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
ssm01004
]
Spirs_2267
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssm04147
]
Spirs_2267
Enzymes [BR:
ssm01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Spirs_2267
Lipid biosynthesis proteins [BR:
ssm01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Spirs_2267
Exosome [BR:
ssm04147
]
Exosomal proteins
Exosomal proteins of breast milk
Spirs_2267
Exosomal proteins of breast cancer cells
Spirs_2267
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
ADK81382
UniProt:
E1R755
LinkDB
All DBs
Position
complement(2426748..2428481)
Genome browser
AA seq
577 aa
AA seq
DB search
MKKRNKEPWKFLDTYRGTVFMGEWPTLVEMFRITVSRYPEHRCLSIYEPDNIFLNYRETL
DVVEKVGNYLVKLGIGKGDKVAVTGKNSPEWAVAYLAVLFAGGIVVPLDYQLHVPELNAL
MKFADVKLLFSDEEKFDQLDGNGILSKEDKISLSPRKPGYVFECVEPESLPRAYPEEDDL
AAILFTSGTMGDPKGVMLTHKNLVSDCYLAQGNMNIFDTDVFYALLPLHHSYTMLAVFIE
SLSVGAEIIFAKKLAIKQILHDLKEGKVTMFLAIPMLFNKMLKGLLRGIREKGVLVYGII
RGLMYLSGLIKKIFKVNPGKAMFKGLLAKLSLDTNRICICGGGPLPSSTFSLFNQLGIDF
VQGYGLTETSPIINLNPKEAYKENSVGQIIPHIEMKILNPDESGIGEIVVKGSVVMQGYY
NNEAATREVFTDDGWFCTGDVGYLDDDNYLYLTGRKKNLIVTEGGKNVFPEEIEDRFQLF
DEIEQILVRGFVIDKKMKSEGIEALVYPSQDAFEALGKKRGSAYTPEEIKARIQEIVDEV
NRDLLSYKKIARVIITEEAMEMTTTKKIKRFAVEGEA
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaacgaaacaaagaaccgtggaaatttctcgatacatacaggggcaccgttttt
atgggagaatggccaaccttggtcgaaatgttccgtataacggtaagcaggtaccctgag
catcgctgtctttccatatacgaacctgacaatatctttcttaattaccgtgaaaccctg
gatgtggtcgagaaggtaggaaattatcttgtcaaactgggaataggtaagggcgataag
gtggctgtaaccggaaaaaatagtccggagtgggccgttgcctaccttgccgtgcttttt
gccggcggaattgttgttccccttgattatcagttgcatgtgcctgaacttaatgcactg
atgaaatttgccgatgtaaagcttcttttttctgatgaagaaaaatttgatcagcttgac
ggaaacgggatcctttcgaaagaagataagatcagcctttcgccacggaaaccggggtat
gtcttcgaatgtgtggagccggaatctcttccgagagcgtatcccgaagaggatgatctc
gccgccatccttttcaccagcggaaccatgggagatcccaagggggttatgctgacacat
aaaaaccttgtctccgactgttacctggctcagggcaatatgaatattttcgacaccgac
gtcttctatgcccttcttcctctgcaccatagctacaccatgcttgcggtctttatagag
tctctgtcggtgggggccgagatcatttttgcaaaaaaacttgccatcaaacaaattctc
catgatttgaaagagggcaaggtaaccatgtttcttgccattcccatgctctttaacaag
atgctcaaggggcttttacggggcattcgggagaaaggggttcttgtatacggaattatt
cggggcctcatgtatctcagtggccttatcaaaaagatttttaaggtaaacccgggaaag
gcgatgtttaaggggctgctcgccaagctttctttggataccaaccgcatctgtatctgt
ggcggaggaccgcttccttcatcgacctttagtcttttcaaccagcttgggatcgatttc
gtccagggctacggattgaccgagacctcgccgatcatcaatctcaaccctaaagaggcc
tacaaagagaactccgtggggcagatcattcctcatattgaaatgaaaatccttaatcca
gacgaaagcggcatcggcgagatcgtcgttaaggggtcggtagtcatgcagggctattac
aacaatgaggccgccacccgtgaggtttttaccgatgacggatggttctgtaccggcgat
gtcggctacctcgatgatgataactacctttatcttaccggccgaaagaagaatctcatc
gttaccgaaggtggaaaaaatgtctttcccgaagaaattgaggatcgattccagcttttc
gacgagatagaacagattcttgtgcgcggctttgttatcgacaagaagatgaagagcgag
gggatcgaggcacttgtttatccgagccaggatgccttcgaagctttgggcaaaaaacgg
gggagcgcatatacgcctgaggaaattaaggcgaggattcaagagatcgttgatgaagtc
aaccgtgacctcctctcatataaaaagatcgcaagggttataataaccgaggaggcgatg
gaaatgacgactaccaagaagataaagcgatttgcggtggaaggagaagcgtag
DBGET
integrated database retrieval system
