Sediminispirochaeta smaragdinae: Spirs_2328
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Entry
Spirs_2328 CDS
T01287
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssm
Sediminispirochaeta smaragdinae
Pathway
ssm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spirs_2328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssm03019
]
Spirs_2328
03009 Ribosome biogenesis [BR:
ssm03009
]
Spirs_2328
Enzymes [BR:
ssm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Spirs_2328
Messenger RNA biogenesis [BR:
ssm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Spirs_2328
Ribosome biogenesis [BR:
ssm03009
]
Prokaryotic type
rRNA helicases
Spirs_2328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DUF5078
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADK81443
UniProt:
E1R1R7
LinkDB
All DBs
Position
complement(2492209..2493837)
Genome browser
AA seq
542 aa
AA seq
DB search
MSNITTFQDLGLSQETLDAIVKKGFEEPTTIQARTIPVMLHSDANIIAQAQTGTGKTAAF
GLPLLDLVDPVSRTVQALVLVPTRELAIQVSEEINSFRGSKKVRIVPIYGGQSIDQQLRR
LKQGVQIVVGTPGRIIDHLNRKTLNLTAISHLILDEADEMLNMGFIDEMEEILKHTNPDK
RTLLFSATMPDKIKKLANDYMEGYELIAVEKEQLTTNLTEQIYFEVKASDKFEALCRIID
IEDSFYGLVFCRTKNDVDTVVNHLLDRGYDAAPLHGDISQAQRERTLGKFKRQNINILVA
TDVAARGIDVNNLTHVINYSLPQDPEAYVHRIGRTGRAGNEGTAITFITPSEYKRLMFIR
KITKTDIKKSQLPKVADIIDAKRKKIDEDLGAIFTKEIDQSYYDWAKRWLEESGKSPSQI
LAALLSLSFNDDLNPNSYGEIAEVRGGDRSQIDHHGTARLFVALGKKDRITPRQLIDLLT
SRSPVRPKQIGDIQIMENFSFVTVPFFLAEKIVAGFKSKGKKPLVTRAKSFEGGKRRKHR
TV
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatataaccacttttcaggatcttggactttcccaagaaacccttgatgcaatt
gtaaaaaaaggttttgaagaacctacaacgattcaggcccgtaccattcctgtcatgctt
cattctgacgctaacatcatagcccaggcccagaccggaaccggaaagactgcggccttc
ggtcttcctcttctcgatttggtcgatcctgtttccaggacggttcaggcgcttgtcttg
gtaccgaccagagaattggcgattcaggtatcggaggagatcaactccttccgcggctca
aaaaaagtacgtattgttcccatttacggggggcagtccattgatcaacagcttcgaagg
ctcaaacagggggtccagatcgttgtcggcactccggggcgtattatcgatcatctgaat
cgaaaaacccttaacctaacggctatctcccacttgattctcgatgaggcggacgaaatg
ctcaatatgggctttatcgatgagatggaagagatcctgaagcatacgaatcccgacaaa
cggaccttgctcttttcagcgacgatgcccgataagatcaaaaagcttgccaatgattat
atggaaggctacgagctgatcgctgtagagaaggaacaactgacgacaaaccttaccgag
cagatctattttgaggtgaaggcctctgataagtttgaggccctctgcagaattatcgat
attgaagatagcttttatggccttgtattctgtcgaacaaagaatgatgtcgataccgtt
gtaaatcacctgcttgatcgcggttacgatgctgcgcccctgcacggagatatttctcag
gcccagcgggagcgcacccttggaaaattcaagcggcagaacatcaatattctcgtggcc
accgatgtcgccgccagaggtatcgatgtaaataaccttacccatgtcatcaactattcc
cttccccaggatcctgaagcgtatgttcatcgaattggtaggacgggaagggccggaaac
gagggaacggcgataacctttattactcccagcgagtataagcgcctgatgtttattcgg
aagatcaccaaaaccgacatcaagaagtcccaactaccgaaggtagcggatattattgat
gcaaagcggaaaaagatcgatgaagatctcggtgctatctttacaaaggaaatcgatcaa
agttattacgattgggcgaaacggtggctggaggagagtggtaaatcaccaagtcagatt
cttgccgcccttctttccctttcctttaacgatgatttgaatcccaatagctatggagag
attgcagaggttagaggcggggacaggagtcagatcgatcatcacggcaccgcccggcta
tttgtagccctcggaaaaaaagaccgcatcactccccggcagctcattgacctgttgacg
agtcgatctccggttcgtccgaagcagatcggtgatattcagatcatggaaaatttctct
ttcgtgacggttcctttttttcttgcagaaaagatagtggccggttttaaaagtaaaggg
aaaaagccccttgttaccagagcgaaatcttttgagggtggtaagaggagaaaacaccga
accgtgtga
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