Sediminispirochaeta smaragdinae: Spirs_2383
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Entry
Spirs_2383 CDS
T01287
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ssm
Sediminispirochaeta smaragdinae
Pathway
ssm03420
Nucleotide excision repair
ssm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Spirs_2383
03430 Mismatch repair
Spirs_2383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssm03400
]
Spirs_2383
Enzymes [BR:
ssm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Spirs_2383
DNA repair and recombination proteins [BR:
ssm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Spirs_2383
MMR (mismatch excision repair)
Other MMR factors
Spirs_2383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
ResIII
YgfZ_barrel
DEAD
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
ADK81498
UniProt:
E1R1X2
LinkDB
All DBs
Position
2557401..2559413
Genome browser
AA seq
670 aa
AA seq
DB search
MAIDLAKELNKEQFIAASTIDGPLLIIAGAGSGKTRMITFRIAHMLEEGIPQSSILALTF
TNKAAREMSDRIRSLTGKRLSNLTVSTFHAFGVKVLRKSIEYLDYKSNFSIYDQVDKTAL
IKESARGIGMIPEDLDTWEIANLFSSVKTGREKWNRENKLYKPLFEEYLANLHAYNAVDF
DDLIMLPIRLFEEFPEVLDAYRRRYRYIMVDEFQDTSLAQYHLMKLLAKKERNICVVGDD
DQSIYSWRGANYQNIVNFEKDFPELLEIKLEQNYRSTGNILAAANQVIANNKNRKSKELW
TGLDNGRSIEIFYPDDDLKEAEFIAQLIATLSMREGYKYHDFGVLVRTNSLAATIENAFL
AENIPYKVSGGQSFFQRKEIKDIIAYLRVLSNPDDDVNFLRIINTPRRGIGRVSLEKLRE
LADEKEWSLYSAASAIRYAEDAPVSDKVKAALGEFVTFIEYYREQILTGKKMADTTRSLV
DKVDYWGYLIMENQKNERAARWKYKNIGIFLDLFERWEKDPDNDDPNIYNYLNRITLITR
DDDQEENNDMVNLMTVHASKGLEFEIVFLAGVEDTIMPHARSLEEDPDNIEEERRLFYVA
ITRAKQKLYLTSCKTRRVSREVIDSSPSRFLEEIPDHLIEYHQPEEEVESGEAMDYFEKI
RAKLGIPDKV
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggcaatagatctggcaaaagaactcaacaaggaacaattcatcgccgccagcactata
gacggccctctccttattatagcgggtgcgggatccggaaagacccggatgatcaccttc
aggatagcccacatgctggaagaagggatcccccaatcctcgattcttgcccttaccttt
accaataaggccgcacgggagatgtcggaccgaatccgttccctcaccgggaaacggctt
tcgaacctgacggtgagcacctttcacgcctttggtgtaaaggtgttacgtaaaagtatc
gagtaccttgattacaaatcaaacttttcgatctacgatcaggtcgacaaaaccgctctt
ataaaggaaagtgccagaggaatcggtatgattcccgaagacctcgatacctgggaaatc
gcaaacctcttctcttcggtaaaaacgggacgggaaaagtggaacagagagaacaagctt
tataagccgctctttgaggagtaccttgcaaatctgcatgcctacaatgccgtcgatttc
gacgatttgatcatgctgccgatacgcctcttcgaagagttccccgaggtgttggatgca
tatcgtcgacgctatcgctatatcatggttgacgaattccaggatacaagcctggctcaa
taccatttgatgaagcttttggcgaaaaaagaacgaaatatctgtgtcgtgggtgatgat
gatcaatcgatatactcatggcggggagcaaactaccagaatatcgtcaactttgagaaa
gactttcccgagctgctggagatcaaacttgaacagaattaccgttcaaccggaaacatc
cttgcagccgccaaccaggtaatcgcaaataacaaaaatcgaaaaagcaaggagctctgg
acaggtctggacaacggaaggtcgattgagatcttctatcccgacgacgacctgaaagag
gcggagttcattgcccagctgattgcaaccctctccatgagggagggatataaataccac
gattttggtgttctggtacgaacaaacagcctcgccgccaccatagaaaatgcctttttg
gccgaaaatatcccctataaggtcagcggcggtcaaagctttttccaacgtaaggagatt
aaggacatcattgcctacctcagggttctctccaatcccgacgacgatgtcaatttccta
cgcatcatcaacaccccgagacggggaataggcagagtcagtctcgaaaaacttcgcgaa
ttggcggatgaaaaggaatggagcctctattccgccgcaagtgctatccgttatgccgag
gacgcaccggtgagtgataaggtcaaggccgccctcggggaattcgtcaccttcatcgaa
tattatcgcgaacagattcttaccggcaaaaagatggcggataccacacgatcccttgtc
gataaggtcgactattggggatatctcatcatggaaaaccaaaaaaacgagcgtgcggcc
cggtggaaatacaaaaacatcggtatcttcctcgatcttttcgaacgatgggagaaagat
ccggacaacgacgaccccaatatctacaactacctcaaccgtatcaccctgatcaccagg
gatgacgatcaggaagagaacaacgatatggtcaatttgatgacggtccacgcatcaaag
gggctcgagttcgagatcgtttttcttgcaggggtggaagatacgatcatgccccatgcc
cgctctctggaagaggaccctgacaacatcgaagaagagcgaaggctcttttacgtcgcc
atcacacgagccaagcagaagctctatctcacaagctgcaaaaccagaagggtatccaga
gaggtgatagactcaagtcccagccgttttctcgaggaaattcccgatcacttgatcgaa
tatcatcagcccgaagaggaggtggaatcgggagaggcaatggattattttgaaaagatc
agggccaagctgggaattcccgataaggtgtag
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