Sediminispirochaeta smaragdinae: Spirs_2639
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Entry
Spirs_2639 CDS
T01287
Name
(GenBank) GAF modulated sigma54 specific transcriptional regulator, Fis family
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
ssm
Sediminispirochaeta smaragdinae
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssm03000
]
Spirs_2639
Transcription factors [BR:
ssm03000
]
Prokaryotic type
Helix-turn-helix
Other families
Spirs_2639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
GAF
PAS_9
PAS_4
PAS
AAA_5
Mg_chelatase
AAA
PAS_8
HTH_30
Diguanyl_cycl_sensor
HTH_7
AAA_2
HTH_29
ATPase
HTH_28
AAA_16
nSTAND3
AAA_22
AAA_7
DUF1492
NB-ARC
HTH_23
IstB_IS21
HTH_Tnp_1
dnstrm_HI1420
Sigma70_r4
TsaE
Motif
Other DBs
NCBI-ProteinID:
ADK81748
UniProt:
E1R4K7
LinkDB
All DBs
Position
2822273..2824357
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AA seq
694 aa
AA seq
DB search
MVSLFFAKMIQIRYTFVTLFWTIVLAKGDVIMESIATETKVMWERFITKGRIEEGALRKE
ITEAWIRCINASVDPFADRSSTVLPQPFLNEILKHHKTLIDIARPFMENLYQFVAGSGFV
VILCDEKGYLMEAVGDNDVLYGDHGLNLQQGAWWAEEEVGNNGVGTALRLKRPFQVSGAE
HFCRKHHPWTCSGAPIFDDSGRVIAVLEMSGPVEKTHLHTLGMVAAGVEAIQQQMRVKKQ
NRELTVLNNSLNNIFLTVSDGVIVIDSRGAVDQVNPAAENILHQSAEKLAGHPFQEYIDN
WHPIHEMLEMGTAFHEIELSINDGDGAITCLTSAKPIKDGGGTVTGGVIFINPITRIKKL
INRFSGAHASFTFDDIIGCGQSLSKAIHLAKLVADNESIVLLSGESGTGKEMFAQAIHNK
SNRRKGPFVAVNCGAIPRELIESELFGYVEGAFTGARKRGKPGKFELASGGTLFLDEIGE
MPLEQQVALLRVLQDKSLTRIGGDKTVMIDTRIICATNKNLQLEVARGTFRQDLYYRLNV
ISIHLPPLREHREDIPTMFEVFLENACKRIGVKVPRINDEVMQRLQCYDWPGNVREFRNV
VERVVNITAGSDICPENLPDEILSPRKGLWPSPMLSEAQNFDEERKKIKALAEKKEQEEI
LAMLYKHNGNVSQAAREMGISRNSLYRKMHKQSD
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcacttttttttgcaaaaatgatacagatacgttacacctttgtgacactcttt
tggaccatcgttttagcaaagggtgatgtaataatggaatcaattgcgactgagacaaag
gtgatgtgggaacgattcatcacaaaagggcggatcgaagagggagctcttcgtaaagag
ataaccgaggcctggatacgatgtattaatgcatctgttgatccctttgcggaccgaagc
agcactgttctcccccagcccttcctcaacgaaattctaaaacaccataagacactcatc
gatatcgctcgtccctttatggaaaacctctatcaattcgtcgcgggatcgggcttcgtg
gttattttatgtgacgaaaaggggtatctgatggaggcggtaggcgataacgatgtgctg
tacggtgatcacggcctgaacctccaacagggcgcatggtgggcggaggaggaggtcgga
aacaacggagtgggaacggcactccgtctaaaacgcccattccaggtttccggtgcggag
catttctgccgtaagcaccatccatggacctgttcaggggctcctatctttgacgacagc
ggaagggttattgcggtcttggagatgtccgggcctgttgagaagacccacctgcacact
ctcggcatggttgcggccggtgtggaagcaattcaacagcagatgagggttaagaaacaa
aatcgggagctgacggtcctgaataacagcctcaataacatctttctcactgtttccgat
ggtgtcattgtcatcgattccagaggcgccgtcgatcaggtaaatccagcggcggaaaac
attttgcatcagagtgcggagaaattggcaggacatccctttcaagagtatatcgacaat
tggcatcccattcatgagatgcttgaaatgggtactgctttccacgaaatagaactttcg
atcaacgacggcgatggtgccatcacctgcctcacctcggcaaaaccgatcaaagacggc
gggggaactgtcaccggcggggtcattttcatcaaccccatcacacggattaaaaaactc
atcaaccgcttcagcggggcccacgcttcttttaccttcgatgatatcatcgggtgcggc
cagtcgctgagcaaagcaatccatctggcaaaactggtagcggacaacgaaagcatcgta
ctgctcagcggcgaaagcgggaccggtaaagagatgtttgcccaggcgatacacaataaa
agcaatcggaggaagggcccttttgtggcggtaaactgtggtgcgatcccgcgggaactg
atcgaaagcgaacttttcggctatgtggagggggcgttcaccggcgcacgaaaacgggga
aagcctggaaaattcgaacttgcctcgggagggaccctctttctcgacgaaatcggagag
atgccccttgaacaacaggttgcattgctgagagttctccaggacaagagccttacccgt
atcggcggcgataaaacggtaatgatcgataccaggatcatctgcgccaccaacaagaat
ctccaactggaagtggcgcgcggaacctttcgccaggacctctactaccgcctcaatgtg
atttcgattcatcttcctccattgcgtgaacatcgtgaggatatcccgacaatgttcgag
gtgttccttgaaaatgcctgcaaaaggatcggtgtaaaggtcccccggataaacgatgag
gtaatgcagcgactacaatgctacgattggcctggcaatgtaagagaattccgaaatgtt
gtcgaacgggtggtcaatataacggcaggtagtgatatttgcccggaaaaccttcccgat
gaaattctctcgccgcgaaaagggctctggccttcgccgatgctcagtgaggcccagaat
ttcgatgaagaacgaaagaagataaaagcactggcggaaaagaaggaacaggaagaaatc
cttgcgatgttgtacaagcataacggcaatgtcagccaggccgcacgtgaaatgggcatc
tcaaggaattcactctaccgaaaaatgcataaacaaagcgactaa
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