Sediminispirochaeta smaragdinae: Spirs_2762
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Entry
Spirs_2762 CDS
T01287
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssm
Sediminispirochaeta smaragdinae
Pathway
ssm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spirs_2762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssm03019
]
Spirs_2762
03400 DNA repair and recombination proteins [BR:
ssm03400
]
Spirs_2762
Enzymes [BR:
ssm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Spirs_2762
Messenger RNA biogenesis [BR:
ssm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Spirs_2762
DNA repair and recombination proteins [BR:
ssm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Spirs_2762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
T4SS-DNA_transf
AAA_22
TniB
Motif
Other DBs
NCBI-ProteinID:
ADK81866
UniProt:
E1R8V9
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All DBs
Position
2957782..2959332
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AA seq
516 aa
AA seq
DB search
MVKDIIAQCAKEHFGIESLYPQQRIVIANILSAAGFYGEEEAEDAPKHQLVILPTGMGKS
ICFMLPCLLMKPLTLVVFPLLSLMSDQKRRFDNAGIPVVLIRGGQSREERQKIFRSIEQE
KVAAILTNPEMLESQRLMELLSTVERIHLVVDEVHTLPEWGESFRPALLKIGGLAERLPI
TQITAFTATAGERIIEGVSRLLFHGDPPNLVTALPDRPNIHYRVIPSLNKSADIAALLAD
GMGKTENHRGEAPTPFVSPMPRPAVIFCRTRKETERMARELRYKLEEDSIRFYHAGLERE
EKELCADWFFTSIRGILVATTAYGMGVDKANIRTVIHHRPSPSVEAFLQESGRAGRDRKP
AWSVVLLSPDDLHPDHGDQRYEALLACFTDANRCRREALLKLLDAQIKECGGCDVCDSSV
QQEARGRRELLTLFRAMPLRWKEKEGATMAAIRFPNITTEEAHSLITALFAEGSLKKVSR
GPWKGLIYPAGFPVSIFRTDPYRSAARGRSPLPQPR
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
gtggtaaaggatatcatcgcacaatgtgcaaaagaacatttcggaatcgaatcactttat
ccccagcaaagaattgtcatagcgaatattctcagtgccgccggtttttacggtgaagaa
gaggcagaggatgctcctaaacatcagttggtaattcttcccactggcatgggcaaaagc
atctgtttcatgttgccttgcctcctcatgaagccccttaccctggtggtctttcccctc
ctttctctcatgtccgatcagaagcgccggttcgacaatgccggtattcccgtcgtcctg
atacggggaggacaaagccgtgaagaacggcaaaagatattccgcagcatagagcaggaa
aaggtagctgcgattttgacaaaccctgaaatgctggaatctcaaaggcttatggagctc
ctttcaaccgtcgaaaggattcatctggtcgtggatgaggtacataccctccccgaatgg
ggagagagttttcgtccggcccttctaaaaatcgggggacttgccgaaaggcttccaatc
actcagatcaccgcatttaccgccaccgcaggagagcgcatcatcgagggagtctcacgt
ctgctctttcacggagatcccccgaaccttgtcaccgcacttcccgatagacccaatatc
cactaccgggtcattccaagcctcaataagagtgccgacatcgcagccttgcttgccgac
ggaatgggcaagacggaaaaccatcggggagaagcccctactccttttgtctccccgatg
ccgaggccagcggtcatattctgcaggacacgcaaggaaaccgaacggatggcaagagaa
ctccgatacaagctggaagaggactcaattcgcttttaccatgcagggctcgagcgagaa
gaaaaagagctatgtgccgactggttttttacaagtataagggggattcttgtagccacg
acagcatacggcatgggtgtcgacaaagcaaatatcaggaccgtcatccatcaccgacca
tctccctcggttgaagccttcctgcaggaatcgggacgggcgggaagagacagaaagcca
gcctggtcggtggtactactctcccctgatgatcttcacccggaccacggcgaccaacgc
tatgaggccctgcttgcctgcttcaccgatgcgaatcgttgccgacgggaagcgctcctg
aagctcctcgacgcacagatcaaggaatgcggcggctgtgacgtttgcgacagcagtgtc
cagcaagaggcacgcggacgccgagagctgctcacccttttcagggcaatgcccctgcgc
tggaaggaaaaagagggagcgaccatggctgcaatccgcttcccgaacatcacaacggaa
gaggcccattcactcatcaccgccctttttgccgaaggaagcctaaagaaggtttctcga
gggccctggaaggggcttatctacccggctggttttcccgtttccatttttcgaactgat
ccttatcgttctgccgccagagggcgaagtccccttccacaaccccgttga
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