Sediminispirochaeta smaragdinae: Spirs_2858
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Entry
Spirs_2858 CDS
T01287
Name
(GenBank) Lytic transglycosylase catalytic
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
ssm
Sediminispirochaeta smaragdinae
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ssm01011
]
Spirs_2858
Enzymes [BR:
ssm01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
Spirs_2858
Peptidoglycan biosynthesis and degradation proteins [BR:
ssm01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
Spirs_2858
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Gene cluster
GFIT
Motif
Pfam:
SLT
LysM
LysM3_LYK4_5
LysM1_NFP_LYK
SLT_2
LysM2_NFP
MMU163
Motif
Other DBs
NCBI-ProteinID:
ADK81961
UniProt:
E1R276
LinkDB
All DBs
Position
3055967..3057349
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AA seq
460 aa
AA seq
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MMMERDKNGDYRRRGPIPLFLFLLPPFFLSSFAFTAAEEAPFLPPRNGKINVIQNIDEAR
SLIPPPRQGHRSEECFTLDIGKRKLVGEYIAYYTKDEGRDFLNRVLNRALPFRAHIAKRI
EEKGLPPELLYLPVVESAFRERAVSSSGAVGLWQFMLNSIEPYPIVVDEWRDDRRDFWKS
TDAALDKLSYNYRILGNDWLLALAAYNCGLGKVQRTIAAAGTSDFWELSRRGLLPRQTIR
YVPKFLAVAAIASHPGRYGFRISWDEPIEWSKVPISGQISLPLLAESTGIELDLLERGNA
ELLYGVTPPSRGDYALKVPADQADIVKKALTRRDAAELMHYTVLSIGDGDTLYAISAHFG
IPISAIIASNPGIVPERLRIGSRLIVPVIRETGPYKSSRSMVSEEELADFTGVHTVDQGE
TLWAIAKRYGTTPEAIAQKNGIVMTDTIYPGHRLLVPEIN
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgatgatggaacgggataaaaacggcgattaccggagaagggggccaattcctcttttc
ctctttcttcttcctccttttttcctttcttcttttgcatttacggctgcagaggaagcg
ccctttcttcccccgcgtaacggtaaaatcaatgtcattcaaaacatcgatgaagcgagg
tctctcatccccccgccgcgtcaagggcaccgttcagaggaatgtttcaccctggatatc
ggtaagaggaaactagtaggagagtatatcgcctattacacaaaggatgagggacgagat
tttctcaatcgggtgctgaatcgtgcccttcccttccgggctcacatcgcaaagagaata
gaggaaaagggtctacctcccgagttgctctatctgccggttgtcgaatcggccttccgg
gaaagggccgttagtagttccggggccgtcggcctgtggcaattcatgctcaacagcatc
gagccctaccctatcgtcgtagacgagtggcgtgacgaccggcgggatttctggaaaagt
accgatgcggcattggataagcttagctataactatcggatactcggtaatgactggctc
ctggccctcgccgcctacaactgcggtttaggaaaggtacagcgaaccattgctgcggcg
ggaacctctgatttttgggaactatcccgccggggcctgcttccgcgccaaacaatccgc
tatgtaccgaaatttcttgccgtggcggcgatcgcctcgcatccgggtcgttacggtttt
cgaatttcatgggatgaaccgatagaatggagtaaagtacctatcagcggccagatttcc
ctcccactgcttgccgaaagtacagggatagagctggatctgcttgaaaggggcaatgcc
gaactcctttatggggtgacacccccctctcgaggagattatgcactgaaggttccggct
gatcaggccgatatagtaaaaaaggcgctgacccgaagggatgctgcggaactgatgcac
tatacagtgcttagcatcggggatggagacacactctatgccatctccgcccatttcggg
attccaatttccgccatcatagcaagcaatccggggattgtgcccgaacgccttcgcatc
ggttcccgccttattgttccggtaatacgggaaacagggccgtacaaaagcagccggtca
atggtatccgaagaggaactggccgactttaccggtgtccataccgtggatcagggggaa
acgctctgggcaatcgcaaaacgatacgggaccacaccggaggctatcgcgcagaagaac
ggtatagtgatgaccgatacaatctatcccggacacagacttcttgtccccgagatcaat
taa
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