Sediminispirochaeta smaragdinae: Spirs_3009
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Entry
Spirs_3009 CDS
T01287
Name
(GenBank) transcriptional regulator, NifA subfamily, Fis Family
KO
K02584
Nif-specific regulatory protein
Organism
ssm
Sediminispirochaeta smaragdinae
Pathway
ssm02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Spirs_3009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssm03000
]
Spirs_3009
Transcription factors [BR:
ssm03000
]
Prokaryotic type
Helix-turn-helix
Other families
Spirs_3009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
GAF_2
AAA_5
HTH_8
AAA_2
AAA
Mg_chelatase
AAA_16
HTH_50
AAA_3
bpMoxR
nSTAND3
XRCC4
CodY
YabA
Motif
Other DBs
NCBI-ProteinID:
ADK82111
UniProt:
E1R3Z0
LinkDB
All DBs
Position
complement(3223744..3225324)
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AA seq
526 aa
AA seq
DB search
MNTSSTCRACEVKSNTALRFLFEMSNSILKEDVISEILQEVLRIMSGHMGLVRGTISIFN
RKSGKISIEEGFGISPEEQARGIYDPGEGITGKVIESGKPALVPDISLEPHFLNRTRVRR
DIGKKQIGFICVPIKGGKEVIGTLNAERFIDEVTDLEEDLCLMQIIAAMISQAVQLYQAH
HEENQVLQEENKRLQRELLEKFTSSRIIGTSKVMRRVFDYVHKIADSMATVLILGESGVG
KELVAKEIHYASGRKNMPFITLNCAALPESIIESELFGHEKGAFTGAVRDRKGRFERAQG
GTIFLDEIGELSPNVQTKLLRVLQEREFERVGGSKTIRCDVRVITATNKDLETAMKNGSF
REDLYYRLNIIPITVPPLRERKSDIPLLVNHFIDKFSRMNHKKVTRISTPAIDMLFSYHW
PGNIRELENCIEHAVILADNQVIHGYHLPPTLQMRLPELKGRQEAGSLQHQLDALEYELL
VEALKSSKGNLSDAAKELGLTNRMIGVRMKKYGLDYKKFRSYKKMK
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgaatacatcatcaacatgcagagcgtgtgaggttaagagtaataccgctcttagattc
ctttttgagatgagtaactccatcctgaaagaggatgtcatctctgaaattcttcaggaa
gtcctgcggattatgtcgggtcatatgggactggttcgaggaacgataagtatcttcaac
agaaaaagcggaaagatatcgatcgaggagggatttggaatttctcctgaggaacaagcc
cggggtatctatgatccgggggaggggattaccggaaaggtgatcgagagcggaaaaccg
gcgctcgtacccgatatttcgctggaacctcatttccttaatcgtactcgggtgcgccgg
gatatcggaaaaaaacagataggctttatttgtgtccccattaagggcggaaaggaggtg
ataggtaccctcaatgcggagcgtttcatcgatgaggtgacggatctggaggaggatctt
tgcctcatgcagattatcgccgccatgatctctcaggctgtccagctgtatcaggcccat
cacgaggaaaaccaggttctacaggaggagaataagcgccttcagcgggaactgctggaa
aagttcaccagcagcaggatcataggtacatcgaaggtgatgcgccgggtctttgattat
gtgcacaaaattgcagattcgatggcgacggttctgatcctgggggaaagcggagtggga
aaggaactggttgccaaggaaatccactatgcaagcggtaggaagaatatgcccttcata
acgctaaactgcgctgcacttccggaatccatcatagaaagcgaattgtttggccatgaa
aagggagcctttaccggggctgttcgcgacagaaaaggtcgttttgaacgtgcccagggc
ggcaccatctttctcgatgagataggtgagctgagtcccaatgtccagacaaagcttctg
agggtgcttcaggaacgggagttcgaacgggttgggggaagcaaaaccattcgctgtgat
gtacgggtgataacggccactaataaagacctcgaaacagccatgaaaaacggcagcttt
cgggaagatctctactatcgactcaatatcattcccatcaccgttccgcccctgcgggag
agaaaatccgatattccccttttggtaaatcactttatcgataagttcagcaggatgaac
cataaaaaggtcacgagaatatctactccggccatcgatatgcttttttcctaccattgg
ccggggaatattcgcgagctcgaaaactgtatcgaacatgcggtgattctggccgataac
caggtgatacacggatatcatcttcctccaacccttcagatgcgccttcctgagttgaaa
ggtcgccaggaggccggaagcctccagcatcagcttgatgcccttgagtatgaattgctt
gtcgaggcattaaagtcttcaaagggaaatctctcggatgcggcgaaggaacttgggctt
accaaccgtatgatcggtgttcgtatgaagaagtacggattggattacaagaaatttcga
agttataaaaagatgaagtaa
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