Sediminispirochaeta smaragdinae: Spirs_3051
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Entry
Spirs_3051 CDS
T01287
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ssm
Sediminispirochaeta smaragdinae
Pathway
ssm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Spirs_3051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssm03400
]
Spirs_3051
Enzymes [BR:
ssm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
Spirs_3051
DNA repair and recombination proteins [BR:
ssm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Spirs_3051
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Spirs_3051
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Spirs_3051
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ADK82152
UniProt:
E1R4R4
LinkDB
All DBs
Position
3270566..3272020
Genome browser
AA seq
484 aa
AA seq
DB search
MARSIYWYDLETFGTHPRLDRIAQFAGLRTDEALNELGEPLVLYCKITQDYVPDPKACLI
TGITPEETLRKGLSERRFIERINEEFMQPGSCVAGFNSIAFDDEFIRATLYRNLMDPFRR
EWAGGNSRWDLLDVLRAARDLRPQGITWPEGENGRPTFRLEKLTEANALPHQNAHDALSD
VRATIAMARLLREKQPKIFSYLYRGRIKDHARQLIDLHKRRPFLHTSAMLSNEYGYTSIL
APVAPHPANQNAILCFDLRQDPEPLIERSVDELRRLIFAPSEELSLEESRIRLIPIHINR
SPVLAPLSTLDPDTAKRLGLDVTLCGKRAAKLAEASLLTQKIMEVFRRDEAEIRRDPELE
IYSGGFFSDADRQRMERFRELSPEAMLKRRGDFYDRRLPELAWRFVCRNHSEILDENERK
KWKSFCAGRLLFPPERLINDFAFFKRKVKELSGDTNLPAGDKKIIKKLAEWATIIEVDVL
SYEG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggcacgaagcatctactggtacgatcttgaaacctttggaacgcatccccgactcgat
cggatagcgcaatttgcaggcctgcgtaccgatgaagccctgaacgagcttggggaaccc
ttggtgctctactgcaagatcacccaggattatgttccggatcccaaggcatgcctgatt
accggtatcaccccggaagaaaccctacgcaaggggctttccgagcgccgctttatcgag
cggatcaacgaagaattcatgcagccgggaagctgtgttgcaggcttcaacagcatcgcc
tttgacgacgagttcatccgtgccaccctctatcgtaatctgatggatccctttcgacgg
gaatgggcgggagggaacagtcgctgggatctgctcgatgtgctgcgggctgcccgggac
ctcaggccccagggcataacatggcccgagggggaaaacggaaggccgacctttcgcctc
gaaaagctgacagaggccaatgcccttccccaccagaacgcccacgatgccctctcggac
gtacgggcgaccattgccatggcacgtctgctcagggaaaagcagccgaaaatcttctcc
tacctttaccggggacgcatcaaggaccatgcccggcagctgatcgatcttcataagcga
aggccttttctccatacttcggcaatgctctccaacgaatacggatatacctctatcctt
gcgcccgtagcccctcatcctgcaaaccaaaatgcgatcctctgtttcgatctccgacaa
gatccggagccccttatagaacgttctgtggatgagcttcgacgcctgatattcgctccc
agcgaggagctctctctggaagaaagcagaatacgcctcattcccattcatatcaaccga
tctccggtattggcccctctttcgaccctcgatccggacacggcaaaacgcctggggctc
gatgtcaccctctgcggtaaacgggcggcaaaacttgccgaagcatccctcctgacacag
aaaatcatggaagttttccgaagggatgaggcggagatacgacgcgaccccgagcttgaa
atttactctggaggcttttttagcgatgcggaccgccagagaatggaacgctttcgcgaa
ctttcaccggaagccatgttgaaacgtcggggagatttttacgaccgcaggctaccggag
ctggcctggcgttttgtctgccgaaaccattccgaaatccttgacgaaaacgaacgcaag
aaatggaaaagtttttgtgcaggacgtcttcttttcccgccggaacgtcttattaatgat
tttgctttttttaaacgaaaggtaaaagaactctccggggataccaatcttccggctgga
gacaaaaaaatcatcaaaaagctcgccgaatgggcgacgatcatcgaagtagatgtattg
agctacgaggggtga
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