Sediminispirochaeta smaragdinae: Spirs_3619
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Entry
Spirs_3619 CDS
T01287
Name
(GenBank) transcriptional regulator, LacI family
KO
K10439
ribose transport system substrate-binding protein
Organism
ssm
Sediminispirochaeta smaragdinae
Pathway
ssm02010
ABC transporters
ssm02030
Bacterial chemotaxis
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
Spirs_3619
09140 Cellular Processes
09142 Cell motility
02030 Bacterial chemotaxis
Spirs_3619
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ssm02000
]
Spirs_3619
Transporters [BR:
ssm02000
]
ABC transporters, prokaryotic type
Saccharide, polyol, and lipid transporters
Ribose transporter
Spirs_3619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peripla_BP_3
Peripla_BP_4
Peripla_BP_1
LacI
Trp_repressor
HTH_3
Motif
Other DBs
NCBI-ProteinID:
ADK82706
UniProt:
E1R7K1
LinkDB
All DBs
Position
complement(3895889..3897916)
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AA seq
675 aa
AA seq
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MAKRQKVTIKDVADTAGVSIATVSHVINCTRYVKPELVQRVQEAIVATGYQNKRISADGS
LSYGRSGAVALLVPNLEEQTYVRIASHIHALAEDSTLRLSVHITNDDKQVERQILQSLIS
KKTYAAILLVPATDNPRSYGKLLRSRIPFVCIERRINSDEICSVTFAIKKAIYLGTKQLI
KNRHERIALLKIQGIGATGKDQLEGYQQALEESSLYYRGSLVFEFEPHMNGEAYEHEIKL
AYERQQPSACVVVGNELTCDLLKTLQNMGKECPRDISIIAYGDNPFYEITAPPLTILKED
TEQMAQRAWDALLRLMAGEQLESRDLQVGVELINRKSTRMLGMGPFGEKAVSPDEIILTT
DERRMLRDKNYRVAISFHYGGTAWTRLHEQAIRATLESFGISVVSVMDAQFDPSLQLAQL
EAIRIQRPDVLIAIPTDDHVTAQKFKELSKTIKLVFISNVPEGLSKESYVTCVSVNEREN
GNNTGILLGDYFKARSSAKVGFIIHGTPFYGTHLRDASAEKVVREMYAHIDIVAIQSFGR
IEHAYDTCKQMIKQHPDIEGLYISWDQPALYAIKALEEMGRTDIAIFTFDLDYKIASYMA
QKKMVMGLSTQRPYEQGEATAKAVAKALVSNETFKFVGVQPYVVKPKQLIKAWKDILHEA
IPSDLERLVKQTVMN
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaggcaaaaggtcactataaaggatgttgcggatactgccggtgtttcgatt
gcaacggtttctcatgttatcaactgtacacgctatgttaagccagagcttgtacagaga
gttcaggaggctattgttgcaacagggtaccagaataagagaatcagcgccgacgggtcc
ctttcgtacggccgcagtggtgctgttgccctgctggtgccgaatctcgaagaacaaacc
tatgttcgtatcgcctcccatattcatgccttggccgaagattctactcttcggctttcc
gtgcatatcacgaatgacgataagcaggtagagaggcaaatactacaatcgcttatttcc
aaaaagacgtatgcggcgatacttttggttcctgccaccgataatccgagatcttatggc
aaattgctacgttcaaggattccttttgtttgtatcgagcggagaatcaactcagatgaa
atttgctctgtgacatttgccataaagaaggcgatatatcttggtaccaaacaactgatc
aagaatcgacatgagcgcattgccttgctcaagatacaggggattggggcgactggtaaa
gatcagcttgagggatatcaacaagcactggaggaaagttcactctattacagaggctcg
cttgtttttgaatttgagccccatatgaacggagaggcatatgagcatgagattaagctc
gcctatgaaagacaacaaccttccgcatgtgttgtagttgggaatgagctgacctgtgat
ctgttgaaaacgctgcagaatatgggcaaggaatgtcctcgggatatctccataattgca
tatggggataatcccttctatgaaatcacggctcctcccctgacaattttaaaagaggat
accgaacagatggcccaaagggcctgggacgctctacttcgtttgatggcgggagagcag
cttgaaagccgtgacttgcaagtgggtgtcgagttgattaatcgaaagtcgacaaggatg
ctgggaatggggccttttggtgaaaaggctgtttctcccgacgagattatattgacgacg
gacgaacgacgtatgctccgtgacaagaattatcgtgtggcgatttcctttcattatggg
ggtaccgcgtggacccgcctgcacgaacaggctattcgggcaacattggaatcttttggg
atttctgtggtatctgtcatggatgcgcagtttgatccgtcgttgcagctggcccagctt
gaagcaatacggatccagcgtcccgatgtgctgattgccatccctaccgatgatcatgtc
actgcacaaaaattcaaggagctttccaagacgatcaagctggtctttatcagcaatgtg
ccggaaggattatcgaaagaatcctacgtcacttgtgtctcggtgaacgagagggaaaac
ggtaataacacgggaattttgcttggagactactttaaagcacgatcgagtgcaaaagtc
gggtttattattcatggtactcccttttatggcacgcatcttcgggatgcttctgcggag
aaggtggtccgggaaatgtacgctcatattgatattgttgccattcaatcctttggaagg
atcgagcatgcctatgatacatgcaaacagatgatcaaacagcatccggatattgagggg
ctgtacatctcctgggatcagccggcattgtatgcaatcaaagctctggaggagatgggg
cggacggatatagcgatctttacatttgatcttgattataaaatagcctcatatatggcc
caaaaaaagatggtgatggggttgagtacccagcgcccttatgagcaaggtgaggctacg
gccaaggccgttgcaaaagcattagttagtaacgagactttcaaatttgtcggcgttcag
ccgtatgttgtaaaacccaaacagcttataaaagcctggaaagatatcttgcacgaggcc
attccgagcgatcttgagcgtttggtaaaacagactgtcatgaattga
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