Sediminispirochaeta smaragdinae: Spirs_3695
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Entry
Spirs_3695 CDS
T01287
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
ssm
Sediminispirochaeta smaragdinae
Pathway
ssm00061
Fatty acid biosynthesis
ssm00071
Fatty acid degradation
ssm01100
Metabolic pathways
ssm01212
Fatty acid metabolism
ssm02024
Quorum sensing
ssm04146
Peroxisome
Module
ssm_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Spirs_3695
00071 Fatty acid degradation
Spirs_3695
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Spirs_3695
09145 Cellular community - prokaryotes
02024 Quorum sensing
Spirs_3695
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
ssm01004
]
Spirs_3695
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssm04147
]
Spirs_3695
Enzymes [BR:
ssm01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Spirs_3695
Lipid biosynthesis proteins [BR:
ssm01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Spirs_3695
Exosome [BR:
ssm04147
]
Exosomal proteins
Exosomal proteins of breast milk
Spirs_3695
Exosomal proteins of breast cancer cells
Spirs_3695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
ADK82781
UniProt:
E1R7S6
LinkDB
All DBs
Position
3982348..3984279
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AA seq
643 aa
AA seq
DB search
MRTIVTLLHQAEKRYGDRPYLTTKTDEGWSPISFHSADTLSRTAAAWFLHQKGKRGDRVA
LLAEGRPEWVISEFAMIKAGLVSVPLSIKLLSEEVPFRLNHSSCRYVVLSRITLGKLLDT
WKQVETKPLLILLDDPDDDEHNRMEGLGITKGPGWISWSSIIKEGRLLLEAEPELVEQSE
ALIAEDDTVNICYTSGTTGNPKGIMLTHLNYWTNANDAVNHFKLPDAECETLVILPLDHS
FAHTVAIYAALARGITLHFVDARGGSMSILRNIPVNLTETNPTFLLTVPALSGNFMKKII
HGIAQQGSLVEKLFHSGITAGIVLEGDGFHKPSLSTRLRYTPIHRMAKALVFNKVKAIFG
NRIGFCVGGGALLEVKQQQFFAALGVPIFQGYGLTEAAPIISANTPHRHKYGTSGSIMPS
VTCKIMKSETEEAKVGEIGEIVIKGDNVMKGYYRNPEASAEALRDGWLWTGDLAAYDEDG
FLVVVGRQKALLISSDGEKYPPEEIEEAISNASDAFNHIMVYNEQRKFTTALVTLNEEHC
RQLFYREGVQEAHKALELIREEFFRFKEAGRGGKKVPSAWAPAFFELIGKQFDEKEGLIN
STMKMVRYKVTDRYRDRIEAMYQDEDFFNQRNIETLQKLFDLR
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcgaacaattgttacgctgctacaccaggccgaaaaacggtatggtgaccgtccctat
ctcacaaccaaaacagacgaagggtggagtccgatatcctttcacagcgcggataccctc
tcccggaccgccgcagcctggtttttacatcaaaaggggaagagaggcgatcgggttgcc
ctcctcgccgaaggacgccccgaatgggttatttcagagttcgcaatgatcaaggcgggc
ctcgtgtcggtccccctttccattaagctcctctccgaagaagttcccttcagactgaac
cactcctcgtgtcggtatgtggttctcagccgtatcacccttggaaaacttctcgatacc
tggaagcaggtagagacaaagccactcttaatcctcctcgacgatcccgatgacgacgag
cataatcgaatggaggggctgggcatcaccaaaggcccgggatggataagctggagcagc
atcatcaaagagggacggcttctacttgaagcggaaccggaactggtcgagcagtcggaa
gcgctcatcgcagaagatgatacggtcaatatctgctataccagcgggaccacgggaaac
cccaaagggatcatgctcacccatctcaattactggaccaatgcaaacgatgcggtaaac
catttcaagcttcccgatgccgaatgtgaaaccctggtgatcctccccctcgaccactcc
ttcgcccacaccgtggcgatctatgccgctcttgcccggggaatcaccctccattttgtg
gatgcccgcggcggatccatgagtatactgcgaaacatcccagtgaatctgaccgaaaca
aacccgacctttctccttacggtcccggccctttccgggaatttcatgaaaaagatcatt
cacggcatcgctcaacagggaagcctcgttgagaaactgtttcatagcggcattacagcg
gggatagtcctggagggggacggctttcacaagccatccctgtcgacaaggttacgctac
acgccgatacaccgcatggcaaaggccctggtcttcaacaaggtcaaggcaatcttcggc
aaccgcatcggtttctgtgtcggaggcggcgcccttttagaggtaaaacagcaacagttt
ttcgcggccctgggtgttcccatctttcaaggctacggtctgaccgaggccgcccccatc
atcagtgcaaatactccccacaggcacaaatacggcaccagcggaagcatcatgccttcg
gtaacctgtaagatcatgaaaagcgaaaccgaggaggcaaaggtcggggagatcggcgaa
atcgtcatcaagggcgacaacgtcatgaagggatactaccgtaatcccgaggcttcggca
gaggccctcagggatggttggctatggaccggggatcttgccgcctatgatgaagacgga
tttctggtggtggtgggccggcaaaaggcgctcctgatcagcagcgacggggaaaaatat
cccccggaggagatcgaagaggcgataagcaatgcaagcgacgccttcaaccacatcatg
gtctacaatgaacagcggaagtttaccactgctcttgttacactgaacgaagagcactgc
cgacaacttttttatagggaaggggtacaggaggcccacaaggccctcgaactcatcagg
gaggaattcttccgcttcaaagaagccgggagaggagggaaaaaggtaccctcggcctgg
gcccccgctttttttgagctcatcggcaagcaatttgacgaaaaagagggccttatcaac
agcaccatgaaaatggtccgctacaaggtgaccgaccgctatcgtgaccggatagaggca
atgtaccaagacgaggacttttttaaccaacgaaacatagagaccttacaaaagctcttt
gaccttcgttga
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