Sediminispirochaeta smaragdinae: Spirs_3800
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Entry
Spirs_3800 CDS
T01287
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ssm
Sediminispirochaeta smaragdinae
Pathway
ssm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spirs_3800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssm03019
]
Spirs_3800
Enzymes [BR:
ssm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Spirs_3800
Messenger RNA biogenesis [BR:
ssm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Spirs_3800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ADK82886
UniProt:
E1R831
LinkDB
All DBs
Position
4095342..4096967
Genome browser
AA seq
541 aa
AA seq
DB search
MKFEEFNLHEDVLAGIKDAGFEACMPVQEATLKETLQGKDVTVQSQTGSGKTAAFLVTIF
QRWCTTKPEERRSTMIISPTRELAVQIEDEAKLLGAHMGMNIGCFYGGVGYKQQEEALKK
GVDLYIGTPGRLIDFGQNRKIDFTTIGTVVIDEADRLFDMGFYPDIRRMLKMMGPREKRM
TMLFSATLGTKVLNVAWEHMNMPVEVSIEPEHITVREITQELYHVEGEKKFSLMLGLLKK
YDPPNAIIFTNMKVTAVEVAKRLSRNGYAAKFLMGDLPQKKRLSTIDRVKHGEIRFLVAT
DVAARGLHVDDLAMVINYDIPEDPESYVHRIGRTARAGKSGRAITLACERYVYGLEPIEQ
LLEQKIPVEWADDALFLEDKSAGIDFRSEYRRASSSGTRSKGRAVPQGTKGRRKDSGGRD
THRGQASATPRRSAASPQRSNETGRRSNQTKKHSGPKSRSNNRKPATAGRPSSAPSERKE
RKPQYKNPDRKATVEKRLELYRQKYGEDFKVVSSTSNSKEVGKKKQKKSIISRIKRKLFK
K
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaagagtttaacttacacgaagatgtccttgcgggcatcaaagacgcgggc
tttgaagcatgtatgcccgtacaggaagcaaccctgaaagagacgcttcagggaaaagac
gttacggtccagtcgcaaacaggatcgggaaaaaccgcagcctttctcgttaccattttt
cagcggtggtgtaccacaaaaccggaagaacggcggagtacgatgatcatctcccccact
agggaacttgccgtccagattgaggatgaggccaaacttctcggagcccatatgggtatg
aatatcggctgtttttacggcggtgtcggttataaacaacaggaagaggccctgaaaaag
ggggtcgatctttatatcggaacccccggacggcttatcgatttcggacaaaacaggaag
attgattttaccaccatcggaaccgtcgtgatcgacgaagccgatcggctgtttgatatg
ggattctaccccgatattcgccgtatgctgaagatgatgggcccccgggagaagagaatg
accatgcttttcagtgccactctcgggaccaaggtgcttaatgtcgcttgggaacatatg
aatatgccggtagaagtttccatcgaacccgagcatattacggttcgggagatcacccag
gaactctaccatgtggaaggggagaagaaattttctcttatgttggggctgctgaagaag
tatgacccgcccaacgccatcatttttaccaacatgaaggtgactgccgttgaggtggca
aagcgtctctcgcgaaatggttatgccgccaaattcctcatgggcgatctgccgcaaaaa
aaacgactttccaccatagaccgcgtcaagcatggtgaaattcgctttctggtggcaacg
gacgttgcagcaagaggcttgcatgtggacgaccttgcaatggtgatcaactacgatatc
cccgaagaccccgaaagctatgtacatagaatcggaaggaccgcacgggcgggaaaaagc
ggcagggccataaccctggcgtgcgaacgctacgtctacggtcttgagcccatagaacag
ttgctcgaacagaagattcccgtcgaatgggccgacgatgcgctctttctcgaggacaaa
agtgcagggattgatttccgatccgaatacagacgagcatcttcttcagggacaaggagc
aagggacgcgctgttccgcagggcaccaagggaaggagaaaggattcaggaggtcgcgat
actcatcgaggccaggcctccgctactccccgccgaagtgctgcctctccccaacgcagt
aacgagaccggacggcgaagcaatcagacaaagaaacatagtgggccaaaaagcagatcg
aacaaccgaaaaccggccacggcaggccgtccctcatcagccccgtcggagagaaaagag
agaaagccgcagtacaagaacccggacagaaaggccacggtcgaaaagcggttggaactg
taccgccagaagtacggagaggatttcaaggtagtttcttcaacgtcgaacagcaaagag
gttggtaaaaagaagcaaaaaaagagcatcatctcccgcattaagcggaagctcttcaaa
aaatag
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