Sediminispirochaeta smaragdinae: Spirs_4306
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Entry
Spirs_4306 CDS
T01287
Name
(GenBank) DNA gyrase, B subunit
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ssm
Sediminispirochaeta smaragdinae
Brite
KEGG Orthology (KO) [BR:
ssm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssm03032
]
Spirs_4306
03400 DNA repair and recombination proteins [BR:
ssm03400
]
Spirs_4306
Enzymes [BR:
ssm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Spirs_4306
DNA replication proteins [BR:
ssm03032
]
Prokaryotic type
DNA Topoisomerases
Spirs_4306
DNA repair and recombination proteins [BR:
ssm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Spirs_4306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
ADK83379
UniProt:
E1RA60
LinkDB
All DBs
Position
complement(4651841..4653751)
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AA seq
636 aa
AA seq
DB search
MQNSYSAQNIQVLKGLDAVRKRPGMYIGSTGPEGLHHLVYEIVDNSIDEALAGFCDEILV
VIEKGNIIRVEDNGRGIPTDLHKEEGVSALEIVMTKLHAGGKFNKDTYKVSGGLHGVGVS
VVNALSEWCDVFVHRDGSIFYQKYDRGNPEKDVATVGETTRHGTITRFKPDGEIFETVEF
SFDVLSRRLRELAFLNKGIRIIIEDERLPQKKTKEFQFEGGVKSFVSFLSESKKPIHKEP
IYFEGIRDGIDLECALEYNEGYSENIFSFVNNINTREGGTHLVGFKTALTRTFNDFLKKS
KFAKKMDETFSGDDVREGLTAVVSVKVPDPQFEGQTKAKLGNSEVRGVVESLVAEHLTYY
FEENPKLIEKILEKITMAARARIAARKARDLTRRKSALESSSLPGKLADCAEKDPSKSEV
YIVEGDSAGGSAKQGRDRQFQAILPLWGKMLNVEKTRADKVLTNDKLQPIIATLGAGAGK
EFDISKVRYHKVIIMADADVDGSHIRTLLLTFFFRYMPELVERGYVYIAMPPLYKMQLGK
SITYAYDERDREKIMKSLFAEETEKVAIQRYKGLGEMNPNQLWETTMDPDSRKIMQVRLE
DAVEADQIFSTLMGEDVEPRRKFIEDNALMVSNLDI
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacagttattctgcccagaacattcaagtgttaaaagggttggatgcagttcga
aaaaggccgggaatgtacattggctctaccggtcctgaagggctgcatcatttagtttat
gagattgttgacaacagcattgacgaggctcttgccggtttttgcgacgaaattttggtt
gtcattgaaaagggaaacatcatccgtgttgaagacaacggacgaggaattccaaccgat
ctccacaaagaagagggtgtgagcgccctcgaaattgtcatgacaaagctccatgccggt
ggaaagttcaataaggatacctataaggtatccggagggctccacggtgttggtgtttcc
gtcgtaaacgcattatccgagtggtgtgacgtatttgttcatcgtgatggctctattttt
tatcaaaaatatgatcggggaaatcccgagaaagatgtcgccactgtaggtgagaccacg
cgtcacggtacgattactcgatttaagccggatggtgagatctttgaaacggtggaattt
agttttgatgtcctttcccgtcgtcttcgggaacttgcttttttaaataagggcatcagg
atcatcatagaagatgagcgccttccccagaagaagacgaaagagttccagtttgagggc
ggtgtaaaaagcttcgttagtttcttaagcgaaagcaaaaagccgattcacaaggagccg
atttacttcgagggaatccgtgacggtatcgatctggagtgtgcccttgaatataacgag
ggatacagcgagaatatcttctcttttgtcaataatatcaacacaagggaaggcggaacc
catcttgtcggctttaaaacggcccttaccaggaccttcaatgattttctgaaaaaatca
aagtttgccaaaaaaatggacgaaaccttttccggtgatgatgtcagggaaggtctgacc
gccgtggtttccgtgaaggttcccgatccccagtttgaagggcaaacaaaggccaagttg
gggaactccgaggtacggggtgttgtcgaatctcttgttgccgagcatttgacttactat
tttgaggagaatcccaagctgatagaaaagatcctcgaaaagattaccatggcggctcgt
gctcgtatcgcagcgaggaaggctcgggatcttacccgccgcaaaagtgccttagagagt
tcaagtcttcctggaaagcttgccgattgcgccgagaaagatccttccaaaagcgaagtg
tatatcgttgagggagacagcgccggcggcagtgcaaaacagggcagggaccgtcagttt
caggccatattgcccctttggggaaagatgttaaatgttgaaaagaccagggccgacaag
gtgctcaccaacgacaagctgcaacctatcattgcgacactgggagcaggggccggaaaa
gagtttgacattagtaaggttcgatatcataaggtgatcatcatggcggatgccgatgtc
gacgggagccatatcagaaccttgctcctcacctttttctttcgctatatgccggaactg
gtcgagcgggggtatgtctatattgcaatgcctcctctttataagatgcaattgggaaag
tcaattacctacgcatatgatgaaagggatcgtgagaagatcatgaaatctctgtttgcc
gaggagactgaaaaggttgctattcagcggtataagggtctcggtgagatgaatccgaat
cagctgtgggaaacaactatggatccggattcaagaaaaattatgcaggtgcgacttgaa
gatgctgttgaagcagatcagatattttctacattgatgggtgaggatgtcgagcccaga
agaaagttcattgaagataatgctctgatggtatcgaacctcgatatatag
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