KEGG   Shigella sonnei Ss046: SSON_0124
Entry
SSON_0124         CDS       T00274                                 
Symbol
lpdA
Name
(GenBank) lipoamide dehydrogenase (NADH)
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
ssn  Shigella sonnei Ss046
Pathway
ssn00010  Glycolysis / Gluconeogenesis
ssn00020  Citrate cycle (TCA cycle)
ssn00260  Glycine, serine and threonine metabolism
ssn00280  Valine, leucine and isoleucine degradation
ssn00310  Lysine degradation
ssn00380  Tryptophan metabolism
ssn00620  Pyruvate metabolism
ssn00630  Glyoxylate and dicarboxylate metabolism
ssn00640  Propanoate metabolism
ssn00785  Lipoic acid metabolism
ssn01100  Metabolic pathways
ssn01110  Biosynthesis of secondary metabolites
ssn01120  Microbial metabolism in diverse environments
ssn01200  Carbon metabolism
ssn01210  2-Oxocarboxylic acid metabolism
ssn01240  Biosynthesis of cofactors
Module
ssn_M00009  Citrate cycle (TCA cycle, Krebs cycle)
ssn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
ssn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
ssn_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:ssn00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    SSON_0124 (lpdA)
   00020 Citrate cycle (TCA cycle)
    SSON_0124 (lpdA)
   00620 Pyruvate metabolism
    SSON_0124 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    SSON_0124 (lpdA)
   00640 Propanoate metabolism
    SSON_0124 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    SSON_0124 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    SSON_0124 (lpdA)
   00310 Lysine degradation
    SSON_0124 (lpdA)
   00380 Tryptophan metabolism
    SSON_0124 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    SSON_0124 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ssn04147]
    SSON_0124 (lpdA)
Enzymes [BR:ssn01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     SSON_0124 (lpdA)
Exosome [BR:ssn04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   SSON_0124 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox FAD_oxidored GIDA Pyr_redox_3 FAD_binding_2 HI0933_like AlaDh_PNT_C Thi4 NAD_binding_8 FAD_binding_3 DAO Lycopene_cycl FMO-like
Other DBs
NCBI-ProteinID: AAZ86918
ShiBASE_China: SSO0124
UniProt: Q3Z5P4
LinkDB
Position
137140..138564
AA seq 474 aa
MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVA
KVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFT
GANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLV
MGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRISKKFNLMLETKVTA
VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQ
LRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWV
GLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNGGE
LLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNPKAKKK
NT seq 1425 nt   +upstreamnt  +downstreamnt
atgagtactgaaatcaaaactcaggtcgtggtacttggggcaggccccgcaggttactcc
gctgccttccgttgcgctgatttaggtctggaaaccgtaatcgtagaacgttacaacacc
cttggcggtgtttgcctgaacgtcggctgtatcccttctaaagcactgctgcacgtagca
aaagttatcgaagaagccaaagcgctggctgaacacggtatcgtcttcggcgaaccgaaa
accgatattgacaagattcgtacttggaaagagaaagtgatcaatcagctgaccggtggt
ctggctggtatggcgaaaggccgcaaagtcaaagtggtcaacggtctgggtaaattcacc
ggggctaacaccctggaagttgaaggtgagaacggcaaaaccgtgatcaacttcgacaat
gcgatcattgcagcgggttctcgcccgatccaactgccgtttattccgcatgaagatccg
cgtatctgggactccactgacgcgctggaactgaaagaagtaccagaacgcctgctggta
atgggtggcggtatcatcggtctggaaatgggcaccgtataccacgcgctgggttcacag
attgacgtggttgaaatgttcgaccaggttatcccggcagctgacaaagacatcgttaaa
gtcttcaccaagcgtatcagcaagaaattcaacctgatgctggaaaccaaagttaccgcc
gttgaagcgaaagaagacggtatttatgtgacgatggaaggcaaaaaagcacccgctgaa
ccgcagcgttacgacgccgtgctggtagcgattggtcgtgtgccgaacggtaaaaacctc
gacgcaggcaaagctggcgtggaagtggacgaccgtggtttcatccgcgttgacaaacag
ctgcgtaccaacgtaccgcacatctttgctatcggcgatatcgttggtcagccgatgctg
gcacacaaaggtgttcacgaaggtcacgttgccgctgaagttatcgccggtaaaaaacac
tacttcgatccgaaagttatcccgtctatcgcctataccgaaccagaagttgcatgggta
ggtctgactgagaaagaagcgaaagagaaaggcatcagctatgaaaccgccaccttcccg
tgggctgcttctggtcgtgctatcgcttccgactgcgcagacggtatgaccaagctgatt
ttcgacaaagaatctcaccgtgtgatcggtggtgcgattgtcggtactaacggcggtgag
ctgctgggtgaaatcggtctggcaatcgaaatgggttgtgatgctgaagacatcgcactg
accatccacgcgcacccgactctgcacgagtctgtgggcctggcggcagaagtgttcgaa
ggtagcattaccgacctgccgaacccgaaagcgaagaagaagtaa

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