Shigella sonnei Ss046: SSON_1104
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Entry
SSON_1104 CDS
T00274
Symbol
rne
Name
(GenBank) RNase E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ssn
Shigella sonnei Ss046
Pathway
ssn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSON_1104 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssn03019
]
SSON_1104 (rne)
03009 Ribosome biogenesis [BR:
ssn03009
]
SSON_1104 (rne)
Enzymes [BR:
ssn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SSON_1104 (rne)
Messenger RNA biogenesis [BR:
ssn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SSON_1104 (rne)
Ribosome biogenesis [BR:
ssn03009
]
Prokaryotic type
rRNA processing factors
SSON_1104 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AAZ87829
ShiBASE_China:
SSO1104
UniProt:
Q3Z333
LinkDB
All DBs
Position
complement(1182473..1185658)
Genome browser
AA seq
1061 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME
TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA
PTPAEPAATVVAPAPKAATATPAAPAQPGLLSRFFGALKALFSGGEEAKPTEQPTPKAEA
KPERQQDRRKPRQSNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA
EVTEKARTTDEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR
KQRQLNQKVRYEQSVAEEAVVAPVVEETAAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ
QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG
KVWIRYPIVRPQDVQVEEQREQEEVQVQPMVTGVPVAAAVEPVVSAPVVEEVAEVVEAPV
QIAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEHAEPVVEPQEETADIEEV
AETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATVPMTRAPAPEYVP
DAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgttgcccttgtagat
gggcagcgtctttatgacctggatatcgaaagtccagggcacgagcagaaaaaggcaaac
atctacaaaggtaaaatcacccgcattgaaccgagtctggaagctgcttttgttgattac
ggcgctgaacgtcacggtttcctcccactaaaagaaattgcccgcgaatatttccctgct
aactacagtgctcatggtcgtcccaacattaaagatgtgttgcgtgaaggtcaggaagtc
attgttcagatcgataaagaagagcgcggcaacaaaggcgcggcattaaccacctttatc
agtctggcgggtagctatctggttctgatgccaaataacccgcgcgcaggtggcatttct
cgccgtatcgaaggcgatgaccgtaccgaattaaaagaagcactggcaagccttgaactg
ccggaaggcatggggcttatcgtgcgcaccgctggcgtaggcaaatctgctgaggcgctg
caatgggatttaagcttccgcctgaaacactgggaagccatcaaaaaagccgctgaaagc
cgcccggctccgttcctgattcatcaggagagcaacgtaatcgttcgcgcattccgcgat
tacttacgtcaggacatcggcgaaatccttatcgataacccgaaagtgctcgaactggca
cgtcagcatatcgctgcattaggtcgcccggatttcagcagcaaaatcaaactgtatacc
ggcgagatcccgctgttcagccactaccagattgagtcgcagatcgagtccgccttccag
cgtgaagtccgtctgccgtccggtggttcgattgttatcgacagcaccgaagcgttaacg
gccatcgacatcaactccgcacgcgcgacccgcggcggcgatatcgaagaaaccgcgttt
aacaccaacctcgaagctgccgatgagattgctcgtcagctgcgcctgcgtgacctcggc
ggcctgattgttatcgacttcatcgacatgacgcctgtacgccaccagcgtgcggtagaa
aaccgtctgcgtgaagcggtgcgtcaggaccgtgcgcgtattcaaatcagccatatttct
cgctttggcctgctggaaatgtcccgccagcgcctgagcccatcactgggtgaatccagc
catcacgtctgcccgcgctgctccggtaccggtaccgtgcgtgacaacgaatcgctgtcg
ctctctattctgcgtttgatcgaagaagaagcgctgaaagagaacacccaggaagttcac
gccattgttcctgtgccaatcgcttcttatctgctgaatgaaaaacgttctgcggtgaat
gcgattgaaacgcgtcaggacggtgttcgctgcgtgattgtgccaaacgatcagatggaa
accccgcactaccacgtgttgcgcgtgcgcaaaggggaagaaacgccgaccttaagctac
atgctgccgaagctgcatgaagaagcgatggcgctgccgtctgaagaagagttcgctgaa
cgtaagcgtcctgaacaacctgcactggcaacctttgccatgccggatgtgccgccagcg
ccaaccccagctgaacctgccgcgactgtcgtagccccagcaccgaaagctgcaacggca
acaccagcagctcctgcacaacctgggctgttaagccgcttcttcggcgcactgaaagcg
ctgttcagcggtggtgaagaagccaaaccgaccgagcaaccaacaccgaaagcagaagcg
aaaccggaacgtcaacaggatcgtcgcaaacctcgtcagagcaaccgccgtgaccgtaat
gagcgccgcgacacccgtagtgaacgtactgaaggcagcgataatcgcgaagaaaaccgt
cgtaatcgtcgccaggcacagcagcagactgccgagacgcgtgagagccgtcagcaggct
gaggtaacggaaaaagcacgtaccaccgacgagcagcaagcgccgcgtcgtgaacgtagc
cgccgccgtaacgatgataaacgtcaggcgcaacaagaagcgaaggcgctgaatgttgaa
gagcaatctgttcaggaaaccgaacaggaagaacgtgtacgtccggttcagccgcgtcgt
aaacagcgtcagctcaatcagaaagtgcgttacgagcaaagcgtagccgaagaagcggta
gtcgcaccggtggttgaagaaactgccgctgccgaaccaattgttcaggaagctccagct
ccacgcacagaactggtgaaagtcccgctgccagtcgtagcgcaaactgcaccagaacag
caagaagagaacaatgctgataaccgtgacaacggtggcatgccgcgtcgttctcgccgc
tcgcctcgtcacctgcgcgtgagtggtcagcgtcgtcgtcgctatcgtgacgagcgttat
ccaacccagtcgccaatgccgttgaccgtagcgtgcgcgtctccggaactggcctctggc
aaagtctggatccgctatccaattgtacgtccgcaagatgtacaagttgaagagcagcgc
gaacaggaagaagtacaagtgcagccgatggtgactggggtccctgtcgccgccgctgtc
gaacctgttgttagcgcaccggttgttgaagaagtggctgaagttgtagaagcccccgtt
cagattgccgaaccgcaaccggaagtggttgaaacgacgcatcctgaagtgattgccgcc
gcagtaactgaacagccgcaggtgattaccgagtctgatgttgccgtagcccaggaagtt
gcagaacacgcagaaccggtggttgaaccgcaggaagagacggcagatattgaagaagtt
gccgaaactgctgaggttgtggttgctgaacctgaagttgttgctcaacctgccgcgcca
gtcgtcgctgaagtcgcagcagaagttgaaacggtagctgcggttgaacctgaggtcacc
gttgagcataaccacgctacggtgccgatgacgcgcgctccggcaccggaatatgttccg
gatgcaccgcgtcacagtgactggcagcgccctacttttgccttcgaaggtaaaggtgcc
gcaggtggtcatacggcaacacatcatgcctctgccgctcctgcgcgtccgcaacctgtt
gagtaa
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