Shigella sonnei Ss046: SSON_2080
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Entry
SSON_2080 CDS
T00274
Symbol
dacD
Name
(GenBank) penicillin binding protein 6b
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
ssn
Shigella sonnei Ss046
Pathway
ssn00550
Peptidoglycan biosynthesis
ssn01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ssn00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SSON_2080 (dacD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ssn01002
]
SSON_2080 (dacD)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ssn01011
]
SSON_2080 (dacD)
Enzymes [BR:
ssn01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
SSON_2080 (dacD)
Peptidases and inhibitors [BR:
ssn01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
SSON_2080 (dacD)
Peptidoglycan biosynthesis and degradation proteins [BR:
ssn01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
SSON_2080 (dacD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
Beta-lactamase
Motif
Other DBs
NCBI-ProteinID:
AAZ88736
ShiBASE_China:
SSO2080
UniProt:
Q3Z0H6
LinkDB
All DBs
Position
complement(2174003..2175175)
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AA seq
390 aa
AA seq
DB search
MLLKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQ
RNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSV
RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQH
SSAYDLAVFSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSG
AGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTER
IWYGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEIELYDRDK
QVAHWPLVTLESVGEGGMFSRLSDYFHHKA
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
ttgctgttgaaacgccgtcttattattgctgcttctttgttcgtttttaacttatcgtct
ggttttgcggcggaaaacattcctttttcacctcagcctccagagattcatgccgggtcc
tgggtattgatggattacaccaccggtcagatcctcaccgcgggtaatgagcatcaacag
cgcaatcccgccagcctgacaaagctgatgacgggttatgtcgtggatcgcgctatcgat
agtcatcgcattacgccagacgatattgtcaccgtggggcgcgatgcgtgggcgaaagat
aatccggtgtttgtcggttcttcactgatgtttttgaaagagggcgatcgcgtatcggta
cgtgatttaagccgtggtttaattgtggattccggaaatgacgcttgtgttgctctggct
gactatattgccggtgggcaacggcagtttgttgaaatgatgaacaactatgccgagaag
ctgcatctcaaggatacgcattttgaaacagtgcatggtctggatgcacctggccagcat
agctcggcttatgatttagctgtgttttctcgcgctatcatccacggcgagcccgagttt
tatcatatgtacagtgagaaaagtctcacctggaacggtatcacccagcaaaaccgtaac
gggttgttgtgggataaaaccatgaatgttgacggcctgaaaacgggtcatacttctggt
gccgggtttaatctcattgcttcggctgtagatgggcagcgtcgtctcattgcagtggta
atgggggctgacagtgcaaaaggtcgtgaggaagaggcaagaaaattactgcgttggggg
caacaaaactttactacggtgcaaattttgcaccgtgggaaaaaggtcggaacggaacgc
atctggtatggcgataaagaaaatatcgacctaggaacggaacaagagttctggatggtg
ctaccgaaagccgaaattccacatatcaaagccaaatatacccttgatggtaaagagctc
accgcgccaattagcgcccatcagcgggtaggggaaattgaactttacgaccgtgataaa
caggtggcgcactggccgctggttaccctggaatctgtcggggaaggcggcatgttttcc
cgcctgagtgattatttccaccataaggcctga
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