Shigella sonnei Ss046: SSON_3388
Help
Entry
SSON_3388 CDS
T00274
Symbol
cafA
Name
(GenBank) bundles of cytoplasmic filaments
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
ssn
Shigella sonnei Ss046
Brite
KEGG Orthology (KO) [BR:
ssn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssn03019
]
SSON_3388 (cafA)
03009 Ribosome biogenesis [BR:
ssn03009
]
SSON_3388 (cafA)
Messenger RNA biogenesis [BR:
ssn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SSON_3388 (cafA)
Ribosome biogenesis [BR:
ssn03009
]
Prokaryotic type
rRNA processing factors
SSON_3388 (cafA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AAZ89960
ShiBASE_China:
SSO3388
UniProt:
Q3YX02
LinkDB
All DBs
Position
complement(3569113..3570600)
Genome browser
AA seq
495 aa
AA seq
DB search
MRKGINMTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQ
AAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGT
KGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAA
EGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVD
SRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLII
DQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNE
DHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV
KTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQ
IEPLYNQEQFDVVMM
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
gtgagaaaagggataaacatgacggctgaattgttagtaaacgtaacgccttcggaaacg
cgagtggcgtatattgatggcggtattctgcaggaaattcatattgaacgtgaggcgcga
cgcggaatagtaggcaatatctacaagggtcgtgtaagtcgtgtacttccgggtatgcag
gcggcttttgtagatattgggctggataaagccgcgtttcttcatgcatccgatatcatg
ccgcacaccgaatgtgtggcgggtgaagaacaaaagcaattcacggtgcgcgacatctcg
gaactggttcgtcaggggcaagatctgatggtgcaggtggtgaaagatccgcttggcact
aaaggtgcgcgcctgaccaccgatatcacgctgccttctcgctatctggtctttatgcca
ggggcttctcacgttggggtttcccaacgtattgaaagcgaatcagaacgtgaacgcctg
aaaaaagtggtcgcagagtattgcgacgagcagggcgggtttatcatccgtaccgcagcg
gaaggggttggcgaggctgaactggcctccgatgccgcttatctgaaacgcgtctggacc
aaagttatggagcgtaaaaagcgcccgcagacccgttatcagctgtacggcgaactggcg
ctggctcagcgtgttctgcgtgatttcgccgacgccgaactggaccgcattcgcgttgac
tcacgcctgacttacgaagcattacttgagttcacctcggagtacattcccgagatgacc
agcaagctggagcattacaccggacgccagccgattttcgatctctttgatgtcgaaaac
gaaatccagcgagcgctggaacgcaaagtagaactgaaatccggtggttatctcattatc
gaccagaccgaagcgatgaccaccgtggacatcaataccggagcgtttgtcggtcatcgc
aatctggacgacaccattttcaataccaatattgaagcgacgcaggctatcgctcgccag
ttacggttgcgtaatctgggcgggattatcattattgatttcatcgatatgaataatgaa
gatcaccgccgccgcgtgctgcactcgctggagcaggcgttgagcaaagaccgggtgaaa
accagcgttaatggtttttcggcgctggggctggtggagatgacgcgtaaacgcacccgc
gaaagcattgagcacgtactgtgtaacgaatgcccaacctgccacggtcgcggaacggtg
aaaaccgtggaaacggtatgctatgaaatcatgcgcgagattgttcgtgtccaccatgct
tacgactccgaccgtttcctggtctatgcttctccggcagtagccgaagccttgaaaggc
gaagagtcacactcgctggcggaagtggaaattttcgttggcaaacaggttaaagtacaa
attgaaccgctctataaccaggagcagtttgacgtcgtaatgatgtaa
DBGET
integrated database retrieval system
