Shigella sonnei Ss046: SSON_3986
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Entry
SSON_3986 CDS
T00274
Symbol
uvrD
Name
(GenBank) DNA-dependent ATPase I and helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ssn
Shigella sonnei Ss046
Pathway
ssn03420
Nucleotide excision repair
ssn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SSON_3986 (uvrD)
03430 Mismatch repair
SSON_3986 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssn03400
]
SSON_3986 (uvrD)
Enzymes [BR:
ssn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SSON_3986 (uvrD)
DNA repair and recombination proteins [BR:
ssn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SSON_3986 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
SSON_3986 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AAZ90509
ShiBASE_China:
SSO3986
UniProt:
Q3YVF3
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Position
4207205..4209367
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AA seq
720 aa
AA seq
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MDVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAV
TFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQL
RLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQTWQKVYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDT
GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENN
NGRLGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQS
RVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGD
RTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQ
TDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAAL
EAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMG
TPMVENDSGYKLGQRVRHAKFGEGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAYARLETV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcttacctgctcgacagccttaatgacaaacagcgcgaagcggtggccgcg
ccacgcagcaaccttctggtgctggcgggcgcgggcagtggtaagacgcgcgtactggtg
catcgtatcgcctggctgatgagcgtggaaaactgctcgccatactcgattatggctgtg
acgtttaccaacaaagcggcggcggagatgcgtcatcgtatcgggcaactgatgggcacc
agccagggcggcatgtgggtcggcaccttccacgggctggcgcaccgtttgctgcgtgcg
caccatatggacgccaatctaccgcaggatttccagatcctcgacagtgaagaccagcta
cgcctgcttaagcgtctgatcaaagccatgaacctcgacgagaagcagtggccgccgcgc
caggcaatgtggtacatcaacagccagaaagatgaaggcctgcgtccgcatcatattcaa
agctacggtaatccggtggagcagacctggcagaaggtgtatcaggcgtatcaggaagcg
tgcgatcgtgcgggcctggtggacttcgccgagctgctgctgcgcgctcacgagttgtgg
cttaacaagccgcatatcctgcaacactaccgcgaacgttttaccaacatcctggtggac
gaattccaggataccaacaacattcagtacgcgtggatccgcctgctggcgggcgatacc
ggcaaagtgatgatcgttggcgatgacgaccagtcaatctacggctggcgcggggcgcag
gtagagaatattcagcgtttcctcaatgatttccccggtgctgaaactatccgtctggag
cagaactaccgctctaccagcaatattctgagcgccgcgaacgccctgattgaaaacaac
aacgggcgtctgggtaaaaaactgtggaccgatggcgcggacggtgagcctatttccctc
tattgcgcttttaacgaactcgacgaagcgcgttttgtggttaaccgcatcaaaacttgg
caggacaacggcggggcgcttgccgagtgcgccattctctaccgcagtaacgcccagtcg
cgtgtactggaagaagcactgttgcaggccagtatgccgtaccgtatttacggcgggatg
cgcttcttcgaacgccaggaaatcaaagacgcgctctcgtatctgcgtctgattgccaac
cgtaacgacgacgcggcgtttgagcgcgtggtgaatacgccaacgcggggtattggtgac
cggacgctggacgtggtacgtcagacatcgcgcgatcgccagttaacactctggcaggca
tgtcgtgaactgttgcaggaaaaagccctcgccgggcgagctgccagcgccttgcagcga
tttatggaattaatcgatgccttagcgcaagaaactgccgatatgccgctgcatgtacag
actgaccgggtaattaaagactccggcctgcgtaccatgtacgagcaggagaagggcgaa
aaaggtcagacgcgtatcgaaaacttagaggaactggtgacggcaacgcgccagttcagc
tacaacgaagaagacgaagatttaatgccgctgcaggcgttcctctcccatgcggcactg
gaagcaggtgaagggcaggcggatacttggcaggatgcggtgcagttgatgacgctacac
tcggcgaaagggctggagttcccgcaggtgtttatcgtcggtatggaagagggcatgttc
ccaagccagatgtcgctggatgaaggcggacgtctggaagaagaacgccgtctggcctac
gttggcgtaacccgtgcgatgcagaaactgacgctgacctacgcggaaactcgccgtctg
tatggcaaagaggtttaccatcgcccgtcgcgctttatcggcgagctgccggaagagtgt
gtggaagaggtgcgcctgcgcgccacggtaagccgcccggttagccatcagcggatgggt
acgccgatggtcgagaacgacagcggctacaaactcggccagcgcgtgcgccacgctaag
tttggtgaaggcaccatcgtcaatatggaaggcagcggtgaacatagccgtttgcaggtg
gcattccagggccagggaatcaaatggctggtggcggcttacgcccggctggagacggtg
taa
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