Saccharolobus solfataricus P2: SSO0189
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Entry
SSO0189 CDS
T00054
Symbol
lig
Name
(GenBank) DNA ligase (polydeoxyribonucleotide synthase (ATP)) (lig)
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
sso
Saccharolobus solfataricus P2
Pathway
sso03030
DNA replication
sso03410
Base excision repair
sso03420
Nucleotide excision repair
sso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SSO0189 (lig)
03410 Base excision repair
SSO0189 (lig)
03420 Nucleotide excision repair
SSO0189 (lig)
03430 Mismatch repair
SSO0189 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sso03032
]
SSO0189 (lig)
03400 DNA repair and recombination proteins [BR:
sso03400
]
SSO0189 (lig)
Enzymes [BR:
sso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SSO0189 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
SSO0189 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
SSO0189 (lig)
DNA replication proteins [BR:
sso03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
SSO0189 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
SSO0189 (lig)
DNA repair and recombination proteins [BR:
sso03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
SSO0189 (lig)
NER (nucleotide excision repair)
Other NER factors
SSO0189 (lig)
MMR (mismatch excision repair)
Other MMR factors
SSO0189 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AAK40535
UniProt:
Q980T8
Structure
PDB
PDBj
LinkDB
All DBs
Position
complement(162109..163914)
Genome browser
AA seq
601 aa
AA seq
DB search
MEFKVIAEYFDKLEKISSRLQLTALLADLLSKSDKTIIDKVVYIIQGKLWPDFLGYPELG
IGEKFLIKAISIATNTDENSVENLYKTIGDLGEVARRLKSKQQSTGILGFLGTTSKESLT
VDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVL
DAMAIAFGGGQSASEIIERAYNLRADLGNIAKIIVEKGIEALKTLKPQVGIPIRPMLAER
LSNPEEILKKMGGNAIVDYKYDGERAQIHKKEDKIFIFSRRLENITSQYPDVVDYVSKYI
EGKEFIIEGEIVAIDPESGEMRPFQELMHRKRKSDIYEAIKEYPVNVFLFDLMYYEDVDY
TTKPLEARRKLLESIVKPNDYVKIAHHIQANNVEDLKSFFYRAISEGGEGVMVKAIGKDA
IYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDSFE
SVCKVASGFSDEQLDELQKKLMEIKRDVKHPRVNSKMEPDIWVEPVYVAEIIGSEITISP
LHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYNKQPKKKIESPAVDES
V
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggagtttaaagttattgccgagtactttgataaattggagaaaatatcttcgaggctt
cagcttacagctttactagctgatcttttaagtaaaagtgacaagacaattatagataaa
gtagtttatattatacaaggcaaattgtggcctgattttttaggttatccagagcttggg
atcggagagaaattcctaataaaagcaatcagtatagccacaaacacggatgaaaattca
gtagaaaatctgtataaaacgataggagatcttggagaggtggctcgaagactaaaaagt
aagcagcaaagtacaggaattttaggatttttgggtaccacaagtaaagagagcttaaca
gtggacgaagtttactctacattatctaaggtagcattaactacgggagagggtagtaga
gatttaaagataagattattagccggcttgttaaaaaaggcagatccattagaggctaag
ttcctagtcagatttgttgaaggtcggcttagagtaggtataggagatgcaacagtttta
gatgctatggcaatagcgtttggtggagggcaatcagcatcggaaataattgaaagagcc
tataatcttagggcagatctaggaaacattgcaaaaattatagtagaaaagggaattgaa
gcgctaaagactctaaagcctcaagttggaataccaattaggccaatgctagctgaaagg
ctatcaaatcctgaagaaatattaaagaaaatgggtgggaatgccatagttgattataaa
tatgatggagagagagcacaaatacacaaaaaagaagataaaattttcatattttctaga
agattagagaacattacttctcagtatccagatgtagttgattatgttagtaaatacata
gaaggtaaagaattcattatagagggagagatagtagctatagatccagaaagtggagag
atgaggccatttcaagagttaatgcacagaaagagaaagtcagatatttatgaagcaatt
aaggagtacccagttaacgtatttctcttcgatctaatgtattatgaagatgtagattat
actacaaagccattagaagctagaagaaaattgctagagagtattgtaaaaccaaatgat
tatgtaaaaatagctcatcatattcaagctaataatgtagaggatcttaaatcgttcttc
tatcgagccatatcggagggcggggagggagtgatggtgaaagcaatcggaaaagatgca
atatatcaagcgggtgctaggggttggttatggataaagcttaaacgtgattatcaaagc
gagatggctgatacagttgacttagtagtggttggcggtttctacggtaagggtaaaaga
ggcggtaagataagctcgttattaatggctgcatataatcctaagactgattcttttgaa
tccgtttgcaaggtagctagtggtttttcagatgaacagcttgatgagttacaaaagaag
ttaatggaaataaagagggacgttaagcatcctagggttaattctaagatggaaccagat
atatgggtagagccagtttatgttgcggagataattggatcagagataacgatatctcct
ttacatacttgttgtcaagacgtagtagagaaggatgctggtttatctataagatttcct
cgatttataagatggagggatgataagagtccagaagatgctacgactactgatgagata
cttgaaatgtacaataagcagcctaagaagaagatcgaatcaccagctgtagatgagagc
gtttaa
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