Streptococcus sobrinus: DK181_00035
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Entry
DK181_00035 CDS
T05567
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ssob
Streptococcus sobrinus
Pathway
ssob03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DK181_00035 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssob03400
]
DK181_00035 (mfd)
Enzymes [BR:
ssob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DK181_00035 (mfd)
DNA repair and recombination proteins [BR:
ssob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DK181_00035 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AWN17970
LinkDB
All DBs
Position
6637..10146
Genome browser
AA seq
1169 aa
AA seq
DB search
MDKTLLQLFNQNKQLQEWQDKTGLLGRQLVMGLSGASKSLAIAGNFLANQGKLVILTASQ
NEAENLASDLVGLVGDDQVYQFFADDIVGAEFIVASQEKSLSRVESLNFLLDERKSGILV
TSLLGARVLLPNPQDYASFVLTFNLGQDYDLSGLAKTLTSLGYKKVSQVLSLGEFSQRGD
ILDIYDGKTDQAYRLEFFGDELDSLRTFDPESQKSLENLESFTLSPVDEAVLTQENRRLA
LAKLEVELERVQNDQLKDYLEGLYTTLADGHRHQDFKRFLSYFYDRTYSLLDYLPQGTPI
FFDDFQKLTDRNAKLNLEITNYLTENLQQAKAVSNQVYFADIFQDLRNYQPASFFSNFHK
GLGNIRFQKIYNFTQYAMQEFFNQIPLLVDEINRYLKTRATVILQADSQAKLEKLQADLR
EYACDLPIVAADELEQGMAQLTQGNLTNGFYFADQKLVLITEKEIFHKTPKRRIRRQNIS
NAERLKDYNELQKGDYVVHNVHGIGRFLGIETIEIKGVHRDYLTVQYQNADRISIPVEQI
ELLSKYMASDGKEPKINKLNDGRFQKAKQKVSKQVEDIADDLLKLYAERSQLKGFAFSAD
DDNQREFEEDFAYVETDDQVRSIKEVKADMESDKPMDRLLVGDVGFGKTEVAMRGAFKAV
NDGKQVAVLVPTTVLAQQHYNNFKERFENYAVQVGILSRFQTKKEQTETLTALSKGQIDI
IIGTHRLLSKDVEFLDLGLIVIDEEQRFGVKHKEKLKELKKKSDVLTLTATPIPRTLHMS
MLGIRDLSVIETPPTNRYPVQTYVLETNPGMIREAIIREIDRGGQAFYVYNRVETIDRKA
MELQELVPEANIGIVHGQMSEIQLENTLFDFLDGVYDVLVATTIIETGIDMPNVNTLFVE
NADRMGLSTLYQLRGRVGRSNRIAYAYLMYQPDKVLSEASEKRLDAIKGFTELGSGFKIA
MRDLSIRGAGNILGASQSGFIDSVGFELYSQMLQGAIQHKQGQSQVRQKGNAEINLGIDA
YLPNDYIDDERQKIEIYKRIREISSQEDYQNLQSELIDRFGDYPDQVAYLLEIGLVKSYL
DAVFVQLAEKKQEEVTIRFEKVSQNLFLTQDYFEALSATNLKARIGEHQGQIEVIFDGRR
KKDYEILEELSKFGQKFSEIKNRKASQKA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atggataagacacttttacaactttttaatcaaaataaacaactgcaagaatggcaggat
aagacaggtctcttaggacgccaactggtcatgggactcagcggtgccagtaagagtttg
gcgattgcggggaactttttagccaatcaaggtaagttagtcattctgacagccagtcaa
aatgaagctgaaaatctggctagcgatctcgtgggacttgtgggtgatgaccaagtctat
caattctttgcggatgatattgtcggggcagagtttattgttgcttcgcaggaaaaatcc
ctctctcgggtggagagtcttaattttttgctggatgagagaaaatctggtattttggtg
accagtcttttgggagccagggtccttttgcccaatccccaggactatgccagctttgtt
ttgacctttaacctgggtcaggattatgacctgtctggtctggctaagaccttgaccagt
ttgggctataagaaggtctcccaggtgctctcactgggcgaatttagtcagcggggagat
attctcgacatctacgatggcaagacagaccaggcctaccgcttggaattcttcggggat
gagttagatagtttgcggacttttgaccctgagagtcaaaagtcgctggaaaatctagag
agcttcaccctaagccctgttgatgaggccgttttgacgcaggagaatcggcgacttgcc
ctggctaagttagaggtggaactggagcgtgttcaaaatgaccagctcaaggactatctg
gaagggctctatacgactctggccgatggccatcgccatcaagattttaagaggtttttg
tcttatttttatgacagaacttacagtctcttggattatttgccccaagggacgccaata
ttttttgatgattttcaaaagttaaccgaccgcaatgccaagttaaatctggagattacc
aactacctgaccgaaaatttgcagcaggctaaggccgtctccaaccaggtctattttgct
gatatttttcaggacttacgcaattatcaacccgccagcttcttttctaatttccacaag
ggtctgggtaatattcgcttccagaagatctacaatttcacccagtatgctatgcaggaa
tttttcaatcaaattcctctattggtggatgaaatcaaccgttaccttaagactagggcg
actgttatcttgcaggctgactcgcaagctaagctggaaaagttgcaagcagatctgcgg
gaatacgcttgtgacctgcccatagtagctgctgatgagttagagcagggaatggctcag
ctgacccagggtaatctgaccaacggcttttactttgctgaccaaaagctggtcttgatt
acagaaaaagaaattttccacaagacccccaaacggcggattcgccggcaaaatattagc
aatgccgagcgactcaaggactacaatgagctacaaaagggcgattatgtggtccacaat
gtccatggtatcgggcgttttctgggaattgaaaccatcgaaatcaagggcgtgcatagg
gactatctgaccgtccagtatcaaaatgctgacaggatttccatccctgttgagcagatt
gaattgctgtccaaatatatggccagtgatggtaaagagcccaaaatcaataagctcaat
gatggccgcttccaaaaggccaagcagaaggtctccaagcaggttgaagatattgctgat
gacctcctcaagctctatgccgaacgcagtcagctcaagggctttgccttctcagccgat
gacgacaatcagagggaatttgaggaagactttgcctacgttgaaaccgatgaccaagtc
cgctccatcaaggaggtcaaggctgacatggaatccgataaacccatggatcggctcttg
gttggtgatgtcggctttgggaagaccgaggtggccatgcggggagccttcaaggcagtc
aatgatggcaagcaggtcgctgtcctagtgccgacaaccgttctggcccagcagcactac
aataatttcaaggaacgctttgaaaattatgccgtccaagtcggtatcctcagtcgcttc
cagaccaaaaaggagcaaacggaaaccctgactgctctgagtaagggacaaattgacatt
attatcgggacccaccggctactctctaaggatgtggaatttttggatttaggactgatt
gtcattgatgaggagcaacgcttcggggttaagcataaggaaaagctcaaggaactcaag
aaaaaatccgatgtattgactctgacggccacgcccattcctcggaccttacatatgtcc
atgctggggattcgggatttgtcagtcatcgaaacgcctccgaccaatcgttatccggtt
cagacctatgttttagaaaccaatcctggtatgattcgcgaggctatcattcgggaaatt
gaccgaggcggacaagctttttatgtctataatcgagtggaaactattgaccgcaaggcc
atggagttgcaggaattagttcctgaagccaatattggtatcgttcacggtcagatgagc
gaaatccagttggaaaacaccctctttgacttcctagatggggtctatgacgtcctagta
gcaacaaccatcattgagacagggattgacatgcccaatgtcaacaccctctttgtggaa
aatgctgaccggatgggtctctcgaccctctatcaattgcggggccgggttggccgtagt
aatcgaattgcctatgcctaccttatgtatcagcctgataaggtcttgagtgaggcttcc
gagaaaaggttggatgccatcaaaggctttaccgagctggggtcaggcttcaaaattgcc
atgcgggatctctctatccgtggggctggcaatattctgggggcctctcagagtggcttt
attgactcggttggttttgaactctattcacaaatgttgcaaggagccatccagcacaaa
caaggccaaagtcaggtccgccagaagggcaatgctgaaatcaatcttggaattgacgcc
taccttcctaatgactacatcgatgatgagcgccaaaaaatcgaaatctacaagcgaatt
cgggaaatttcctcccaggaagattaccaaaacctgcagtctgagttaattgaccgcttt
ggcgactatcccgaccaggtggcctacctgttagaaatcggtctggtcaagtcttatctg
gatgctgtctttgttcaactagctgagaagaagcaggaggaagtgaccatccgttttgaa
aaggtcagccaaaatctctttttgacccaggactattttgaagccctgtcggcaaccaat
ctcaaagctagaattggtgagcatcaaggtcaaatcgaagttatttttgatggccgccgg
aaaaaggactacgaaattttagaagagttaagcaaatttggccagaaattctcggaaatc
aagaatcgaaaagctagccaaaaggcataa
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integrated database retrieval system
