Streptococcus sobrinus: DK181_01585
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Entry
DK181_01585 CDS
T05567
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ssob
Streptococcus sobrinus
Pathway
ssob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DK181_01585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssob03019
]
DK181_01585
Messenger RNA biogenesis [BR:
ssob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DK181_01585
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
SIS_2
Permuted_GreAB-C
Motif
Other DBs
NCBI-ProteinID:
AWN18204
LinkDB
All DBs
Position
complement(283244..284935)
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AA seq
563 aa
AA seq
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MSNINLKPEEVGVYAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDYS
YIIENVDRIKGLVITHGHEDHIGGIPFLLKQANIPVYAGPLALALIRGKLEEHGLLRDAK
LYEINDNTESTFKNLSVTFFRTTHSIPEPLGIVIHTPQGKIVCTGDFKFDFTPVGQPADL
HRMAALGDDGVLCLLSDSTNAEIPTFTNSEKVVGQSIMKIIGGIHGRIIFASFASNIFRL
QQAAEAAVKNGRKIVVFGRSMEKAIVNGIELGYIKVPDGTFIEPNELKNYHASEIMIMCT
GSQGESMAALARIANGTHRQVTLQPGDTVIFSSSPIPGNTTSVNKLINTIQEAGVDVIHG
KINNIHTSGHGGQQEQKLMLRLIKPKFFMPVHGEYRMQKVHAGLAEDTGIPRDNIFIMEN
GDVLALTKDSARRAGHFNAQDIYVDGNGIGDIGTAVLRDRRDLSEDGVVLAVATVDFKTK
MILAGPDILSRGFVYMRESGDLIRQGQRILFNAIRIALKNKEASIQSINGAIVNALRPFL
YEQTEREPIIIPMILTPDKEDDK
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatatcaatttaaaacccgaagaagtcggggtttatgccataggcggactggga
gaaatcggcaagaatacctacggtatcgaataccaagatgaaatcatcatcgttgatgcc
ggtatcaagtttccagaagacgacctccttggtatcgactatgttatccctgactattcc
tacatcattgaaaatgtggatcggattaagggtctggttatcacccacggtcacgaggac
cacattggtggtattcccttcctgcttaagcaggccaatattcctgtttatgccggacct
ttggctttagctcttatccgtggaaaattagaagaacatggtctcctgcgcgatgccaaa
ctttacgaaatcaatgacaacacggagtcgacttttaagaacctcagcgttaccttcttc
cggacgacccactcgattccagaacctctaggaattgtcatccacaccccacaaggaaaa
atcgtctgtaccggtgacttcaagttcgacttcacccctgttggtcaaccagctgatctt
catcggatggctgcacttggtgatgatggcgttctctgtctcctatccgactcgaccaat
gcagagattccaacctttactaattcggaaaaagtggttggtcaatccatcatgaaaatt
atcggtggcatccacggtcggattattttcgcttccttcgcctcaaatattttccggctg
caacaggctgccgaagctgccgttaagaacggtcggaaaatcgtcgtttttggtcgctca
atggaaaaagccattgtcaatgggattgaacttggttatatcaaggttcctgatggtacc
ttcatcgaacccaatgaactcaagaactaccatgccagcgaaatcatgattatgtgtacc
ggtagccagggagaatccatggcagccttggctcggattgccaatggcacccaccggcaa
gtcaccctacaaccaggtgacaccgttatcttctcctctagcccaattccgggtaacacc
accagcgtcaacaagctgattaacactatccaagaggctggtgttgatgttatccacggc
aagattaacaatatccatacctcaggacacgggggccaacaagagcaaaagctcatgctc
cgtttgattaagccaaaatttttcatgccagttcacggtgaataccggatgcaaaaggtc
catgctggtctggctgaagatacaggtattccaagagataacatcttcatcatggaaaac
ggtgatgtccttgccctgaccaaggactctgcccgtcgggccggtcacttcaatgcccaa
gacatctatgttgatggtaatggtatcggcgacatcggtaccgctgtcctgcgggaccgt
cgcgatctctccgaagatggtgttgtcttagctgttgctaccgttgatttcaagactaag
atgattctggcaggtccagacatcctcagtcgtggttttgtctatatgcgtgaatctggc
gaccttattcgccaaggtcaacgcatcctcttcaatgccatccggattgccctcaagaat
aaggaagccagtattcaaagcatcaatggtgctattgtcaatgccttaagacccttcctt
tacgagcaaaccgaacgagagcctatcattattccaatgattctaacccccgacaaagaa
gatgataaatga
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