Streptococcus sobrinus: DK181_03225
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Entry
DK181_03225 CDS
T05567
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssob
Streptococcus sobrinus
Pathway
ssob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DK181_03225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssob03019
]
DK181_03225
03009 Ribosome biogenesis [BR:
ssob03009
]
DK181_03225
Enzymes [BR:
ssob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DK181_03225
Messenger RNA biogenesis [BR:
ssob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DK181_03225
Ribosome biogenesis [BR:
ssob03009
]
Prokaryotic type
rRNA helicases
DK181_03225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AWN18504
LinkDB
All DBs
Position
623615..625180
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AA seq
521 aa
AA seq
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MKFTELHLAEDILQAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
NKIAIDNNVIQALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIDKQIKALRSGA
HIVVGTPGRLLDLIKRKALKLSHVETLILDEADEMLNMGFLEDIEAIISHVPDERQTLLF
SATMPDAIKRIGVKFMKEPEHVKIAAKELTSDNVEQFYIRVKEREKFDTMTRLIDIEQPE
LSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEMGYLSIIENLTKK
RMKGLKPASAQDAFQAKKAVALKKIERDFADETIRSNFDKFKGDAIKLAGEFSPEELALY
ILSLTVQDPETMPEVEISRERPLPFKPSGSNRGGGKGGRNSRGRGGRDRYRRDNRDGNGR
RDFKRKSNKNFRDFDKKDNKRPHRTSSEKKNGFVIRNKGDR
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttactgaattacatttagcagaagatattctgcaagccgttgaaaaagctggt
tttgttgaaccatccccaattcaagaaatgaccattcccctagccttagaaggcaaggat
gttatcggtcaagcccagacagggacgggtaaaacggcggctttcggtcttccaacccta
aataaaattgctattgacaataatgtcattcaagccttggtcattgccccaacacgggaa
ttggctgtgcaaagccaggaagaacttttccgctttggccgtgaaaagggcgttaaggtt
cgctcagtttacggtggctctagtattgacaagcaaattaaggccctgcgctctggtgcc
cacattgttgtcgggacaccaggtcgtctcttagacttgattaaacgcaaggctctcaag
ctcagtcatgttgaaaccttgattttggatgaggccgatgaaatgcttaatatgggcttc
ttggaagatattgaggccatcatcagccatgttcctgatgagcgccaaaccttgcttttc
tcagctaccatgcctgatgccatcaagcgaattggtgtcaaattcatgaaagagcctgag
catgtcaagattgcggctaaggagttgaccagcgataatgttgagcaattctacatccgt
gttaaggaacgcgaaaaatttgataccatgacccgactgattgatatcgaacaaccagaa
ttgtcgatcgtctttggtcggaccaaacgtcgggtagatgaattgacccgtggcctcaag
ttgcggggttaccgagcagaaggaatccatggcgacttggaccaaaacaagcgtctgcgg
gttattcgtgattttaaaaacgataatctggatatcctcgtggccaccgatgtggctgcc
cgcggcctcgatatttctggcgtaacccatgtctacaactatgatattccccaagaccct
gaaagctatgtccaccggattggtcggacaggtcgtgccggaaagtctggtaagtccgtg
accttcgtttctccaaatgaaatgggctacctctccattattgagaatctgaccaagaaa
cgcatgaagggcctcaaaccagcctcagctcaggatgcttttcaagctaagaaggctgtt
gccctcaagaagattgaacgggattttgcggatgagacgattcgctctaattttgacaaa
ttcaagggtgatgccatcaagctggcaggcgagttttctccagaagaattggccctctac
atccttagcctaaccgttcaggatccagaaaccatgcccgaggtggaaatctctcgcgag
cgtcctctgccatttaaaccatcaggttctaaccgtggtggcggaaagggcggtcgcaat
agtcgtggtcgtggtggtcgtgatcgctaccgccgtgataatcgagacggcaatggtcgc
cgtgacttcaaacgcaagtctaataagaatttcagggacttcgacaagaaagacaataag
cgacctcaccgcacctctagcgaaaagaaaaatggcttcgttatccgcaataagggtgat
cgctaa
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