Streptococcus sobrinus: DK181_07195
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Entry
DK181_07195 CDS
T05567
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ssob
Streptococcus sobrinus
Pathway
ssob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DK181_07195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssob03019
]
DK181_07195
Messenger RNA biogenesis [BR:
ssob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DK181_07195
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Regulator_TrmB
Motif
Other DBs
NCBI-ProteinID:
AWN19232
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Position
complement(1486874..1488535)
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AA seq
553 aa
AA seq
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MSDIKIIALGGVRENGKNLYLAEINESIFVLDAGLKYPENEQLGVDVVIPNMDYLIENRD
RVQGVFLTHGHADAIGALPYLLQDVRVPVFGSELTIELAKLVVKNNSQVKKFNNFNVVDA
QTEIEFKDAVVSFFSTTHSIPESLGIVLRTDQGNIVYTGDFKFDQAASPGYQTDYARLAE
IGQEGVLALLADSANADSKVQVASEAEVGEEMDDVISDAQGRIIVAAVASNLSRIQQVFD
AAAEYGRRVVLTGFDVENIVRTAIRLKKLSIADEKLIVKPKDMNKYEDHELIILEAGRMG
EPIEGLRKMSIGRHRYVEIKDGDLVYIVTTPSVAKEAVVARVENMIYKAGGSVKLITQNL
RVSGHANGRELQLLMNILRPKYLFPIQGEYRELQAHADLAEEIGMLPENIYIMKQGDIML
LGDQGFMHEGGVPASDVMIDGNAIGDVGNIVLRDRKILSEDGIFIVVITVNKKKKTIVSK
AKVHTRGFVYVRKSRDILRESADLVNKTVADYLATEGFDWGELKGSVRDELGKFLFDQTK
RRPAILPVIMEVR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatattaaaattattgccctgggtggggtgcgtgaaaacgggaagaacctctac
ctggcggagattaatgagtccatctttgttttggatgctgggctcaagtacccagaaaat
gaacaactgggggttgatgtggtcatccccaacatggactatttgattgaaaatcgggac
cgagtacagggtgttttcctgactcacggtcacgctgacgctatcggtgccctgccttat
cttttgcaggatgtgcgggtgccagtctttgggtctgaattgaccatcgaattggctaag
ttggtggttaagaataactcacaagttaagaaattcaataacttcaacgtggttgatgcc
caaacagaaattgaattcaaggacgcggtcgtttccttctttagcacaacccactccatt
cctgaaagcttgggaattgtcttgagaactgaccaaggtaatattgtttacaccggcgat
ttcaagtttgaccaagcggctagtcctggttaccaaaccgattacgctcgtctagcggaa
attggtcaagaaggtgtcctagctcttttggcagactcagctaatgcggacagcaaggtt
caagtagccagtgaggcagaagtcggcgaagaaatggatgatgtcatttcagatgcccag
gggcggattattgtcgctgctgtggccagcaacctgtcccgaattcaacaggtctttgat
gcggccgctgaatacggccgtcgcgttgtcctgacgggatttgacgtggaaaatattgtc
cggacagccattcgtttgaagaaacttagcattgctgatgaaaagctgattgtcaaacct
aaggacatgaacaagtacgaggaccacgagctgattatcctagaagctggtcggatgggg
gaacctatcgagggcctgcggaagatgtctatcggacgtcaccgctatgtggaaatcaag
gatggcgatttggtctatatcgtgaccacgcctagcgttgccaaggaagccgttgtcgct
cgtgtggaaaatatgatttacaaggctgggggctctgttaagctgatcacgcagaactta
cgagtgtctggtcatgctaatggtcgtgaactgcagcttttgatgaatatcctgcgacct
aaatacctcttcccgattcaaggggagtaccgagaacttcaggcccatgcagacctggca
gaagaaattggcatgttgccagaaaacatctatatcatgaagcagggtgacatcatgctt
ttaggtgaccaaggcttcatgcatgaaggtggtgtaccagctagcgatgtgatgattgac
ggtaatgccattggcgatgtgggcaacattgtcctgcgggatcgcaagattctttccgaa
gacggtatctttattgtggttatcacggttaacaagaagaaaaagaccattgtctccaaa
gctaaggtccatactcgtggatttgtttatgtgcgcaagagtcgggacattctgcgtgaa
agtgccgacctggtcaacaagactgtggcggattatctggcaaccgaaggcttcgactgg
ggcgaactcaagggctctgttcgtgacgaattgggcaagtttctctttgaccaaaccaaa
cgtcgtccagctatcttgccagtgattatggaagtacgttaa
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