Streptomyces solicamelliae: ABZO31_26365
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Entry
ABZO31_26365 CDS
T11072
Name
(GenBank) AlkA N-terminal domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
ssoc Streptomyces solicamelliae
Pathway
ssoc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ssoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ABZO31_26365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssoc03000
]
ABZO31_26365
03400 DNA repair and recombination proteins [BR:
ssoc03400
]
ABZO31_26365
Enzymes [BR:
ssoc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
ABZO31_26365
Transcription factors [BR:
ssoc03000
]
Prokaryotic type
Helix-turn-helix
AraC family
ABZO31_26365
DNA repair and recombination proteins [BR:
ssoc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ABZO31_26365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
XCW06793
LinkDB
All DBs
Position
5708481..5709830
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AA seq
449 aa
AA seq
DB search
MTDDDSRYEAVSSRDARFDGAFFFAVRTTGIYCRPSCPAVTPKRANVCFFPTAAAAQGHG
FRACRRCRPDAVPGSAEWNARADVVGRAVRLIGDGVVDREGVPGLAGRLGYSARQVQRQL
TAELGAGPIALARAQRAHTARLLLQTTALPVTDIAFAAGFASVRQFNDTIRRIYARTPSA
LRAESGTGAGTRTGTAAGVPLRLAHRGPYAAREVFDLLALEALPGVEEVTGPSGARTYRR
TLRLPYGHGVAAVDEASPGAWLEARIHLADLRDLTTAVQRLRRLFDLDADPYAVAERLAA
DPLLAPRVAARPGVRSPGAAAPDEYALRVLLGPDEAARLVGAYGTALDTPCGGLTHLFPE
PGALAGHPVAGPLAAALAAGAVRLDPGADRDGAERALLAVDGVTPAAAAAIRRRALGDPD
VGPAGEPAPEAWRPWRSYAARYLEAAYAG
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
gtgacggacgacgacagcaggtacgaggcggtcagcagccgggacgcccggttcgacggg
gcgttcttcttcgcggtccggaccaccgggatctactgccgccccagctgccccgccgtc
acccccaagcgcgccaacgtgtgcttcttcccgaccgccgccgccgcgcagggccacggc
ttccgggcctgccggcgctgccggccggacgccgtgcccggctccgccgagtggaacgcc
cgggccgacgtcgtcggccgcgccgtgcggctcatcggcgacggcgtcgtggaccgcgag
ggcgtgcccggcctcgccggccggctcggttacagcgcccgccaggtgcagcgccagctc
accgccgagctcggcgcagggccgatcgccctggcccgcgcccagcgcgcccacaccgcg
cggctgctgctccagacgaccgcgctgccggtcaccgacatcgccttcgccgcgggtttc
gccagcgtccggcagttcaacgacaccatccgccggatctacgcccgcacccccagcgcc
ctgcgcgccgagtcgggtacgggcgccggcacccgcaccggtaccgcggccggcgtcccg
ctgcggctcgcccaccgcggcccgtacgcggcccgcgaggtcttcgacctgctcgcccta
gaggccctgccgggcgtcgaggaggtcaccggcccgtccggcgcccgcacctaccggcgc
accctgcgcctcccgtacggccacggcgtcgccgccgtcgacgaggcgtcccccggggcc
tggctggaggcccggatccacctcgccgacctgcgcgacctcaccaccgccgtccagcgg
ctgcggcggctgttcgacctggacgccgacccgtacgcggtggccgaacggctcgccgcc
gatcccctgctcgccccgcgcgtcgccgcccggcccggtgtccggtcgcccggcgcggcc
gcgcccgacgagtacgcgctgcgggtgctgctcggccccgacgaggccgcccgcttggtc
ggggcgtacggcacggccctcgacaccccgtgcggcggcctcacgcacctgttcccggag
cccggcgcgctcgccgggcaccccgtcgccggtccgctggccgccgcgctcgccgccggg
gccgtacggctcgacccgggcgcggaccgggacggggccgagcgggcgctgctcgccgtc
gacggcgtcaccccggccgcggccgccgcgatccgccggcgcgccctcggcgacccggac
gtcggcccggcgggggagccggcgccggaggcgtggcggccctggcgctcgtacgccgcc
aggtatctggaggccgcgtacgcggggtga
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