Solea solea (common sole): 131444137
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Entry
131444137 CDS
T10853
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
ssoe Solea solea (common sole)
Pathway
ssoe04140
Autophagy - animal
ssoe04148
Efferocytosis
ssoe05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
131444137 (vps18)
04148 Efferocytosis
131444137 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
131444137 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssoe04131
]
131444137 (vps18)
Membrane trafficking [BR:
ssoe04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
131444137 (vps18)
Hops complex
131444137 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-RING_16
zf-C3HC4_2
Apolipoprotein
zf-RING_Vps41
zf-RING_5
zf_RING_Vps8
DUF1664
DUF5600
zf-ANAPC11
zf-RING_UBOX
zf-C3H2C3
zf-RING_11
zf-rbx1
DUF4446
LETM1_C
Motif
Other DBs
NCBI-GeneID:
131444137
NCBI-ProteinID:
XP_058470288
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All DBs
Position
17:complement(8308160..8312881)
Genome browser
AA seq
979 aa
AA seq
DB search
MASILDEYEDSQNIRQQHSRLSSTNIGIAHSGFVNVRLEEEKPIFNKQRIDFTPPEKINH
LAVCNNQLCMSLGKDTLLRIDLAKPDQPNQIELGRKDDSKVHRLFLDPTGSHVLISMSSC
ECLYLNRNTQKARSLSRWRGHLIESVGWNKVLGNETNTGPILVGTSQGIIFEAEISASEG
SLFNTNPDQYFRQVHCLEEDGKPAPVCCLEIERGLESKYFIIATTRKRLFQFVGKVAEGT
EQQGFSTIFNQNQDLLPSFQEFPANMGYSEITFYTSKLRTSPKAFAWMMGNGVLYGQLDY
VRPDSLLSDVQVWEYTPDIDISLNKPISIVLTQFHFLLLLHDRVKAICTLNGQVVYEDVF
PDKFGSLKKMIKDPVGGLVWIYTEQAVFRYQIQREARDVWQMYMSMNKFDLAKEYCRDRP
ECMDMVLAKEAEHCFQNKRYLESAKCYALTQNYFEEIALKFIEAKQDEALKEFLLKKLNN
LKMSERTQITLLVTWLTELYLNRLGQLESDGNTIIFQETREEFRNFLSSSKHKECLFNNR
STIYDLLASHGNVDDMVYFSVVMQDYERVISHYCQHDDFSAALGVLSKHCDEKLFYKFSP
VLMQHIPKNVVDAWIQMGKKLDPKKLIPALMNYSQMGSTQQISETIRYMEFCVYELNVTE
EAIHNYLLSLYAKYKPASLLLYLEQAGTHASEIHYDLKYALRLCAEHGYLKECVLVYRIM
ELYEEAVDLALKVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNCLSSC
NLLKIEDILPFFPDFVTIDHFKEAICSSLEEYNQHIDELKQEMEEATESAKRIREDIQEM
RNKYGVVDSQEKCAACDFPLLNRPFYLFLCGHMFHNDCLFQEVTPHLSAYKQSRLEELQK
KLAATTQSSKSRHRPVPKDEGDTSSLGKGNAGTSREQIKSDIDDIIATECVYCGELMIKS
IDKPFIDPHKFEEEKSSWL
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atggcttccattctcgacgagtacgaggactcgcaaaacataaggcagcagcacagccgt
ttgtcaagcaccaacatcggaatagcacactcaggctttgtgaatgtgaggcttgaagaa
gagaagccgatattcaacaagcagaggatcgattttactccaccagagaaaataaaccat
cttgcagtttgcaacaatcagctgtgcatgagtctggggaaggacaccctgctgaggatt
gacttggccaagccagatcagcccaatcagattgaattaggaaggaaagatgacagtaaa
gtgcacagactcttcctggaccccactggctcccatgtgctgatcagcatgagctcctgt
gagtgtctgtacctcaacaggaacacacagaaggcacgcagcttgtcccgctggagaggc
catctcattgagagtgttggctggaacaaggtgctgggcaatgagaccaacacagggccc
atcttagttggcaccagtcaaggcatcatttttgaggctgagatctccgcaagtgagggc
agcctgttcaacaccaatccagaccaatacttcagacaggtccactgtctggaggaggat
gggaaaccagcacccgtctgctgcctggagatagagcgtggcctggagagcaagtacttt
atcatcgccaccacccgcaaacgcctgttccagtttgtgggtaaggtggccgaggggaca
gagcagcaaggcttcagcactatcttcaaccagaaccaggacctgttgcccagtttccag
gagtttccagccaacatgggctacagtgagatcacgttctacacctcaaagcttcgaacc
tcccctaaggcgtttgcctggatgatgggtaatggagttctttacggtcagctggactac
gtgaggcctgattccctgctaagtgatgtgcaggtatgggagtacactccggacattgat
attagcctcaacaagcccatctccattgtgctgacacagttccacttcctgttgttgctt
catgaccgagtcaaggccatctgcaccctgaatgggcaggtggtttatgaggatgtgttc
ccagataaatttggctcccttaagaagatgatcaaggacccagtcggggggttggtatgg
atctacactgagcaggcagtcttccgatatcaaatccaacgtgaggccagggatgtgtgg
cagatgtacatgagcatgaataaatttgatctggcaaaggagtactgccgtgaccggcct
gagtgcatggatatggtcctggctaaggaggctgagcactgcttccagaataaacgatac
ctggagagtgccaagtgctatgcgctgacacagaactattttgaagagatagcactcaag
ttcatcgaagccaaacaggacgaagccttaaaagaattcttactgaagaagctaaataat
ttgaaaatgagtgagagaacacagatcaccctgctggtcacctggctaaccgagctctac
ctgaaccgtcttggccagctggagagtgatggtaacaccatcatcttccaggagacccgt
gaagagttccgcaacttcctcagtagctcgaagcacaaggagtgccttttcaacaatcgc
agcaccatctatgacctgctggccagccacggcaatgtggatgacatggtgtacttctcc
gttgtcatgcaggactacgaaagagtgatatcccactactgccaacacgatgacttcagc
gctgctcttggggtgctctccaagcactgtgatgagaagcttttttacaagttttccccc
gtcctcatgcaacatattcccaaaaacgtggtggatgcatggattcagatgggcaagaag
ctggatccaaagaagctcattccagctctgatgaactacagtcagatgggcagcacccag
cagatcagtgaaaccatccgctacatggagttctgtgtgtatgagcttaatgtgacagag
gaggcgatccataactacctgctgtcactttatgccaaatataagcctgcctctctgctg
ttgtatctggagcaggcaggcacacacgcctcagagatacactatgacctgaagtatgct
ctcaggctgtgtgctgaacatggctacctcaaggaatgtgtcctggtctataggataatg
gagctgtatgaggaggcagtagatcttgctttaaaagtagatgtggacttggccaagtca
tgtgctgacctgcccgaggatgatgaggaactgaggaagaagctttggctaaagattgcc
cggcatgttgtgcaagaagagaaagatgtaaagaaagccatgaactgcctgtccagctgc
aatctactcaagattgaagacatactgcccttcttcccagactttgtcaccattgaccac
ttcaaggaggccatctgcagctccctggaggagtataaccagcacattgatgagctgaag
caggaaatggaggaagctacagaaagtgccaaacgaataagagaagacatccaagaaatg
aggaacaaatatggtgtagtggattcccaagaaaagtgtgctgcctgtgacttcccattg
ctcaacagacccttctatttattcctttgtggacacatgttccacaatgactgcctgttt
caggaagtcacccctcacctgtctgcctacaagcagagtcgcctggaggagctacagaaa
aagcttgccgcaaccacacaatcctccaagtcacgccaccgtccagtccccaaggatgag
ggtgatacttccagtctgggaaagggcaatgctggcacaagccgggagcagataaaatca
gacattgatgacatcattgcaactgagtgcgtgtactgcggcgaactaatgatcaaatct
attgacaagccattcattgatccacataaatttgaggaggagaaatccagctggctatga
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