Solea solea (common sole): 131444469
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Entry
131444469 CDS
T10853
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
ssoe Solea solea (common sole)
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssoe03021
]
131444469 (scaf8)
03041 Spliceosome [BR:
ssoe03041
]
131444469 (scaf8)
Transcription machinery [BR:
ssoe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
131444469 (scaf8)
Spliceosome [BR:
ssoe03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
131444469 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
131444469
NCBI-ProteinID:
XP_058470785
LinkDB
All DBs
Position
18:3189564..3210849
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AA seq
1447 aa
AA seq
DB search
MEAVKAFNNELYSLNEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIIPTFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGIAPPSVTPVMPSSAAPVNNTTPGTPATPATPANLVQGLPDWAS
QITNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSLNPLEQRVSSFNKKLLGPFDFGNDNERGEESKKDSSSSQLPMVSEPINSSLF
HQLAEQLQQQNLEQFQKQLLEHQQHQQKAMSIEGQDSMYGQENSVTAQSSSQPQLPEPEN
KMDDSIDNQQQDMDLDEGPDGMEEESFEAEEKKTASKRSRTRSRSHSRSPKRRRSRSRSG
SRKRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWV
GQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSFKIGS
KVIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDGFAEGGIIDQETVNDEWEA
AKNAEPVKEVASQPVSAETTAVSNTQTETYSQQVTMMPVQLPVAQAVPSAVGLVPPNFPV
TMSIPPPGYGPPPPFIRAGFNATQPPPGFMQAAQAVTTSLVQPSLVNSQEAVKESPFSAM
IPPTSTIPGSFMPSAIPGAGVFNPVGVQPQQVGHEKTAQSADGLDAAELTLQGMQNAVRS
GMGLLGMHPSASLTHPLHQSALSAQRMPGLLPLDVRPNLLQAGAAARFPLLMQHGPAAGL
LEASLQAQARARAPFPQMDPFNRAPNLTNENVAKKEEESSSGADEGKDQDYRFPPMEKQS
TGLLRTPPPDHRDSLGGGAAGRPPLLQTPGAARSSLVGRLQALAGFTPDNRWNQARGDFD
ERDGMRVGPQAPGGPKGFQEERPTPGQNFPNRFDSRPGTAGAAGAPGNAGAAAGPQTWNR
GGSGGGGGGGGGGGGGGGGGAAAPAPFDSELHQDLDERRRPWDRQRDRDERDFDFRREMN
GNRHSRERERERERERERERDRDRGRDRSRDFERDRDRDKERDRERERERGGWTPLLPLP
TPLLPTPTLNPNLTLNQGKLLSPLKLNPQMQSRFQSPLLPQLQGKPSLMGLNQPLPPVQI
KTPPPSQSSAAAPEPQSETAAPASETPEAQSPPSTHSPDLSPDLSPDLSPDQSPDQSPDN
KSQSPVTEAPIQAQSSPSSSSSSSPPQSETPPQSESQFQPTVQSPSKSVSSPDTETPNQA
SPLVEASSQDSPVAFTLTPVSPREETTPSPEERESSPKNDDESQDSREFSVQQQWLNGPG
LDNSNVADPTPEGSPEPSPVPFSDSVRPESEPEQLASPKDVDNEQSEPAEEAASQPVVDT
VTDTEGT
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtcaaagcctttaacaacgagctgtactcgttgaacgagtacaagccgccc
atctccaaggccaagatgactcagatcaccaagtctggaatcaaggctataaaattctac
aaacatgtcgtccagagtgtagagaagttcatacaaaagtgcaaaccagaatacaaggtt
ccgggcttgtacgtcatcgactcaatcgtcaggcagtcacgacaccagtttggcacagag
aaggacgtatttgccccgcgcttcagcaagaacatcatccctacattccagcacctctac
cgctgcccttcagatgataagagtaagattgtgcgagtcctcaacctatggcaaaagaat
gccgtcttcaagagtgacatcatccaacctctgctggatatggcagcagggatcgctccc
cccagtgtcacccccgtcatgccgagcagtgccgccccggtcaacaacactacacctggt
accccggctactccggccactccggccaacttagtccagggtctgcctgactgggcctcc
cagattaccaacacagacactgttgcagctgtggcgcagatcctccaaagcccccaggga
cagcagttgcagcagctggtacagagtcttcagatgcagcagcagaaacctcagccgtcc
ctgctgcaggccttggacgccggcttagtggtgcagttgcaagctctgaccgcacagctc
accgctgctgccaccgccaacagcctcaaccccctggagcagagggtctcctcttttaat
aaaaagcttttgggtccgtttgactttgggaacgataacgaacgtggcgaagaatctaag
aaagacagttcatcatctcagttgccgatggtgtcagagcccatcaacagctccctcttc
caccagttagccgagcagctccaacaacagaacctggagcagtttcagaagcagctgctc
gagcaccaacagcaccagcagaaggctatgagcattgaagggcaggactcgatgtatggg
caggaaaactctgtgactgctcagagcagcagccagccgcagcttcctgagccagagaac
aagatggacgactccatagataaccagcagcaggacatggacctggatgagggccctgat
ggaatggaggaggagagctttgaggctgaggaaaagaaaactgctagcaaacgctccaga
acacgctcaaggtcacactcgaggtctcccaagaggaggcggtccaggtcccgctctggc
tcacggaaacgcaagcaccgcaaacgctcgcgctcacgctccagagatcgcaagaggaag
tcgtcgcgctcttactcgagcgagaggcgcgccagagagcgagagaaggagcggcagaag
aaaggcctgccccccataaggtccaagactctaagtgtgtgcagtacaactctgtgggtg
ggccaggtggacaaaaaagccactcagcaagatcttaccaatctgtttgaagaatttggc
cagattgaatccatcaatatgatccctcccagaggctgtgcctacatctgtatggtccac
agacaggatgcgtaccgtgctcgccagaagctcagcaccggctcctttaagatcggctcc
aaagtcattaagattgcgtgggctctaaacaagggcgtaaaacaggagtacaagcagttt
tgggacgtggacctgggtgttacctacataccttgggagaaggtgaagctggatgatctg
gatggtttcgctgaaggaggaatcattgaccaggagaccgtgaatgatgagtgggaagca
gccaagaacgctgagccagtgaaggaagtcgcaagtcagccagtaagcgcagagactaca
gctgtgtccaacactcagactgagacctacagccagcaggttaccatgatgcctgtgcag
ctgccggtggcacaggctgttcccagtgcagtaggtttggtgcccccgaatttccccgtc
accatgagcatacctccgccaggctacgggccgccaccgcccttcataagagccggcttc
aatgccacgcagcctccgccaggttttatgcaggcagcacaggcggttactacttctctg
gtgcagccttcattggtgaacagccaggaagctgtcaaggaatccccgtttagcgctatg
atccctccgaccagcaccatccctggcagcttcatgccctcggccatccccggggctggt
gtattcaacccagtgggagtccaacctcagcaagttggtcatgagaaaacagctcagtct
gcagatgggttggatgccgcagagctcacactgcaaggcatgcagaacgcagtccgcagt
gggatgggtcttcttggcatgcacccgtctgcttccctcacccacccgctgcatcagtcc
gctctgagcgcgcagagaatgcccggcctgttgcctctcgacgtgcgacctaacctcctt
caggcgggggccgcagcccgcttccctctcctcatgcagcacggccctgctgctggcctc
ctcgaagcctccctccaggctcaggcacgtgcccgggctcctttccctcagatggacccc
ttcaaccgggccccgaatctcaccaatgagaacgtagccaagaaagaagaagagtcttct
tctggggctgacgagggcaaagaccaggactatcgctttcccccgatggaaaagcagagc
acaggcctactgaggacccctccaccagatcacagggactccctcggaggtggagcagca
ggccggccccctttgctccagactccgggggcagccaggtccagcctggtaggacgtctg
caagctctcgcaggctttactcctgataatcgctggaaccaagccaggggggacttcgac
gagcgagatggcatgcgagttggcccgcaagctcctggtggtcctaaaggcttccaggag
gagcgacccacacctgggcagaattttcccaaccgctttgacagccgtcctgggacagcg
ggagctgccggggctcctggaaatgcaggagctgctgcggggccacagacctggaaccga
ggaggcagcggaggaggaggaggtggcggtggcggcggcggtggtggtggtggtggtggt
gctgctgccccggcaccttttgacagtgaactacatcaagacctagacgagcgaagacgc
ccgtgggacaggcagagagacagagatgaaagagattttgacttcagaagggagatgaac
gggaaccgtcacagccgtgagagggagcgcgagcgcgagagggagcgtgagagggaaaga
gacagagatcgaggcagagatcgcagcagggactttgaacgtgacagagaccgcgacaaa
gagagagaccgcgagagggaacgtgaacgtggtggttggacacctcttcttccactcccc
actccccttcttccaacgccgactctcaatcctaatctgaccctgaaccaaggcaaatta
ctctcaccactcaaattaaacccccagatgcagtcacgtttccagtctcccctcctgcct
cagcttcagggcaaaccttccctcatgggtttgaaccagcctctccctccagttcagatc
aagactccgcctccctcacagagctctgctgctgcaccagagccccagtcagaaactgca
gctccggcgtctgagacacctgaggcgcagtcgccgccctcgacccactcacctgacctg
tcacctgacctgtcacctgacctgtcacctgaccagtcacctgaccaatcacctgataac
aagagtcagagcccagtgactgaggctcccatccaggcccagtcatcaccatcatcatca
tcatcatcatcaccaccacagtcagagacccctccccaatcagaatcacaattccagccc
acagtccagtccccctccaaatccgtctcctctccagacactgagaccccaaaccaagcc
tcacccctggttgaggcgtcatcccaggactcacccgtggccttcacattaacccccgtc
agcccccgcgaggagacgaccccctctccggaggagcgggaaagctcgccgaagaacgat
gacgagtcgcaagactccagagaattctcggtccaacagcagtggctcaacggacccggg
ctggacaatagcaatgtggctgatcccacaccagagggctcccccgagccctccccagtc
cccttctctgattctgtgcgcccagaaagtgaaccggagcagcttgcttcgcccaaggac
gtagacaatgaacagagtgagcccgcggaggaagctgcgagtcagccagtggtagacact
gtcacagacactgaggggacataa
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