Solea solea (common sole): 131444626
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Entry
131444626 CDS
T10853
Symbol
ptbp1a
Name
(RefSeq) polypyrimidine tract-binding protein 1a isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
ssoe Solea solea (common sole)
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssoe03019
]
131444626 (ptbp1a)
03041 Spliceosome [BR:
ssoe03041
]
131444626 (ptbp1a)
Messenger RNA biogenesis [BR:
ssoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
131444626 (ptbp1a)
Spliceosome [BR:
ssoe03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
131444626 (ptbp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
131444626
NCBI-ProteinID:
XP_058471124
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Position
18:complement(6896050..6910497)
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AA seq
581 aa
AA seq
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MDGRLDADLYPLGSGYVPEIDSVHDISVGTKRGSDELFSSCISNGPYIMNSANGNDSKKF
KGDVRSPGVPSRVVHVRKLPNDINEAEVIGLGLPFGKVTNLLMLKGKNQAFLELNSEECA
QTMVNYYSSVTPVIRSHPIYMQYSTHKELKTDNSPNQVRAQAALQAVNALHGGGMGAMAI
STEAATMAGAGAQSPVLRTIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALIQ
YADGMTAQHAKLSLDGQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPNADSQP
SIDHQAMTAAAFAAPGLISASPFGGAHGFPPTFAFQQGVNFPHVGLSMPGIPGALASLGV
GHGGMAAAAAAASRLGLSGLTATGGHNVLLVSNLNPESVTPHCLFILFGVYGDVIRVKIL
FNKKENALIQMSDGTQAQLAMSHLNGQRLHGRAMRATLSKHTTVQLPREGHEEQGLTKDY
SNSPLHRFKKPGSKNYSNIFPPSATLHLSNIPPSVVEDDLRRLFGSSGATVKAFKFFQKD
RKMALIQMGSVEESIESLIEFHNHDLGENHHLRVSFSKSTI
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggacggccgcctagacgctgacttgtaccctctgggatccggctacgtccctgaaatt
gacagtgtccatgacatatcagtaggcacaaagaggggatctgacgaactcttttcttcc
tgcatatctaacgggccctatatcatgaactcagccaatggcaacgacagcaaaaaattc
aaaggtgacgtccgcagtcctggtgtaccatcacgtgtggtccacgtacgcaagcttccc
aacgacataaatgaggccgaagttattggcttgggattgccctttgggaaggtcactaat
ctgctaatgctgaaggggaaaaatcaggcgttcttagaactgaacagcgaggagtgtgca
cagacgatggtgaactattattcctctgtcactcccgtcatcagaagccaccccatttac
atgcagtactcaactcacaaggagctcaagacggacaactcccccaaccaagtacgtgca
caggcagccctgcaagcagtcaacgcactgcatggaggtggaatgggagctatggccatt
tccacagaagcagctaccatggcaggagcaggggctcaaagccctgtactgagaaccatt
gtggaaaaccttttctaccctgtcaccctggatgtgcttcaccagattttctctaagttt
ggtaccgtgctgaagatcatcactttcaccaagaacaaccagtttcaggctctgatccag
tatgctgatggcatgaccgcacagcatgctaaactgtctctggacggacagaacatctac
aatgcctgctgtaccctgagaataagcttctccaagctcaccagcctcaatgtcaagtac
aacaatgataagagccgagactacacccgaccggacctcccaaatgctgattcacagcct
tctattgatcaccaggcgatgaccgctgctgcatttgctgcgcctggcttaatctccgcc
tctccgtttggaggagcccatggcttccccccaacctttgcctttcaacagggagttaat
ttcccccacgtaggtctgtcgatgcctggtatccccggtgccctggcgtcccttggtgtt
ggccacggcggtatggcggctgcagcggctgctgccagccgactcggcctctcagggctc
acagccactggtggacacaatgtgttgttggtcagcaatctgaaccctgagagcgttacg
ccacactgcctctttattcttttcggtgtttatggcgatgtgataagagtgaagatcctg
ttcaacaaaaaggagaatgctctgatccaaatgtctgatggcacacaggcccagctagct
atgagccacctgaacggtcagcggctgcacggcagggccatgcgcgccacgctgtcgaag
cacaccacggtgcagctacctagagaaggccacgaggaacagggcctcacaaaggactac
agcaactcgccactgcaccgctttaagaagcccggctccaagaattactccaacatcttc
ccaccctctgcaacactccacctctctaacataccgccttctgtggtggaggatgacctc
aggagactgtttggcagctcaggagccacagtcaaggccttcaaattctttcaaaaagac
cgcaagatggccttgatccagatgggctcagtcgaggagtcaattgagtccctcattgag
ttccacaaccacgacctgggagagaaccaccaccttcgagtgtccttctccaagtccacc
atctga
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