Solea solea (common sole): 131445831
Help
Entry
131445831 CDS
T10853
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ssoe Solea solea (common sole)
Pathway
ssoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131445831 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssoe03019
]
131445831 (mtrex)
03041 Spliceosome [BR:
ssoe03041
]
131445831 (mtrex)
03009 Ribosome biogenesis [BR:
ssoe03009
]
131445831 (mtrex)
03016 Transfer RNA biogenesis [BR:
ssoe03016
]
131445831 (mtrex)
Enzymes [BR:
ssoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131445831 (mtrex)
Messenger RNA biogenesis [BR:
ssoe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
131445831 (mtrex)
Spliceosome [BR:
ssoe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
131445831 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
131445831 (mtrex)
Ribosome biogenesis [BR:
ssoe03009
]
Eukaryotic type
Pre-60S particles
Helicases
131445831 (mtrex)
Transfer RNA biogenesis [BR:
ssoe03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
131445831 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
131445831
NCBI-ProteinID:
XP_058472504
LinkDB
All DBs
Position
19:complement(8927283..8949206)
Genome browser
AA seq
1037 aa
AA seq
DB search
MADAFGDGLFSVFDDEQQTTTSKKILPPVPPETGKAISKNGSEKDAGPSARLKREVDSDG
GEEVVFEKKPRLETALANDLNLAEFMPQVKVEQVETVEGCSHEVALPASDEYKPLKSRVG
KAAKEYPFVLDPFQREAILCIDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEIMREVAWVV
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQTCHVVYTD
YRPTPLQHYVFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGGSSGGGKWDPRGR
KGGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDDEKRLVEEVF
SNAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATET
FAMGINMPARTVLFTSARKFDGKSHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMS
PAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEK
IKKLEEQYHAIEIPNEESVVTYFKIRQQLAKLGKEIQEFINKPKNCLPFLQPGRLVKVRN
EDLDFGWGVVVNFCKKSNVKSVADSDPLYVVEVLLHCNKDSVKDAATEAAKPAAPGETGE
MQVVPVMLHLVTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGI
KDPALKKVIQKVEAFEHRMYSHPLHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTV
LQMDQLKCRKRVLRRLGFASPSDVIEVKGRVACEISSADELLLTEMVFNGLFNDLTAEQA
TALLSCFVFQENASEMPKLTEQLAAPLRRMQECAKRIAKVSADAKLEVDEETYLNQFKPH
LMDVVFAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAE
GITKIKRDIVFAASLYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgcgtttggagatggcttgttcagcgtgtttgatgatgaacaacaaactacc
acgagcaaaaagattctccccccagtgcccccagaaacagggaaagctataagtaaaaat
ggctctgaaaaggatgctggaccctctgcacggctcaagagggaggtggacagtgacggc
ggagaggaagtggtgtttgagaagaaacctcgacttgagacagccttggctaatgaccta
aatcttgcagaattcatgccccaagtgaaggtggagcaagttgaaactgtggaaggatgc
tcacatgaggtggctttacctgccagtgatgaatataaacctctgaaatccagagtggga
aaagcagccaaggagtacccttttgttcttgacccattccagcgtgaggccatcttatgt
attgacaacaatgagtctgtgcttgtgtctgcacacacatctgcaggcaagactgtctgt
gctgaatatgccatagctctagccctcagagaaaagcagagagtgatcttcacaagcccc
atcaaggcactttcaaaccagaaatacagagagatgtacgaggagtttcaggacgtgggt
ctgatgactggtgacgtcaccatcaaccccactgcctcttgcctcatcatgacaacagag
atcctgaggagcatgttgtacagaggctctgagataatgagggaagtggcgtgggtcgtc
tttgacgagatccattacatgagagatgcagagcgtggtgtcgtgtgggaggagaccatc
attcttcttcctgacaacgtccattatgtcttcttgtcagccaccatccccaatgctaga
cagtttgctgagtggatttgtcacctgcataaacagacatgccatgttgtgtacacagac
tatcgtcccactcctctgcaacactacgtctttccagcagggggcgatggtctccacctg
gtggttgatgagaacggagacttcagagaggacaatttcaacacggctatgcaggtgttg
agagatgcaggcgattctgggggcagcagtggaggtggcaaatgggaccccagaggacgc
aaaggaggcactaaaggtccatccagtgtgttcaaaattgtgaagatgatcatggagagg
aatttccagcctgttatcattttcagcttcagcaagaaagagtgtgaggcctacgcactg
caggtggccaaactggactttaacacagatgacgagaaacgcctggtggaggaggtgttc
agcaacgcagtcgactgtctttcagatgaagacaagaaactccctcaggtagagcatgtg
ctgccgctgctgaagaggggaataggtatccatcacggaggcctgctgcccatcctgaag
gagacgatcgagatccttttctccgaaggcctcctcaaggccctgttcgccacagagacg
tttgccatgggcatcaatatgcccgcccgcactgtgctcttcaccagcgcacgcaagttt
gatggcaagagtcatcgctttattacatcaggtgagtacatccagatgtctggacgtgct
gggaggagaggaatggacgacagaggaatcgttattttcatggtggatgagaagatgagt
ccggctgtgggcaaacagctcctcaagggatcagctgacccgttgaacagtgccttccat
ctgacctacaacatggtgctgaacctgctgcgtgtggaggagatcaaccctgagtacatg
ctggagaaatccttctaccagttccaacactatagagctttgcctggtgttgtggagaaa
ataaagaagctggaagagcagtaccatgccatcgagatacctaacgaggaaagtgtcgtc
acttactttaaaatcagacagcagctggctaaactgggcaaagagatacaggagttcatc
aataaacccaaaaactgcctgcccttcttgcagcctgggcgacttgtcaaggtaagaaat
gaagaccttgactttggctggggagttgtcgttaacttttgcaagaagtctaacgtgaag
agcgttgcagactcggatccgctgtatgtggtggaggtcttgctccactgtaataaggac
agtgtaaaagatgctgcgactgaggctgctaaacctgctgcaccaggagagactggagag
atgcaggtggttcctgtgatgcttcatcttgtgacttccatcagctctgttcgactttac
atccccaaagacctgaggccctttgacaacaggcagctcatgctcaaatccatacaggag
gtgcagaagcgattcccagatggcgttcctctgcttgaccccatagatgacatgggcatc
aaagaccctgcactgaagaaagtcattcagaaagtggaggcctttgagcaccgcatgtac
tcccaccctctgcacagtgaccccaacttggagtctgtatattctctgtgtgagaagaaa
gctctgattgcagcagatgttcgaacagcgaagagagagctgaagaaagcacggaccgtc
ctgcagatggaccagctcaagtgcaggaagagagtcctgcgacgcctgggcttcgccagc
ccctctgatgtgattgaggtgaaggggcgagttgcttgtgaaattagcagtgcggacgag
ctcctgttgacagagatggtgttcaatggtctcttcaacgatttgacagcggaacaagcc
acggccctgctgtcctgctttgtcttccaggaaaatgccagtgagatgccaaaactaact
gaacagttggctgcacctctgagacggatgcaggagtgtgcaaagcgcatagccaaggtg
tcggccgatgccaagctggaggtggacgaggagacttatctaaaccagtttaagccccat
ctgatggacgtggtcttcgcctgggcgaacggcgccaccttcgctcaaatctgcaagatg
actgacgtctttgaagggagcatcatccgctgcatgcggcgtctggaggaagtgctgaga
cagatgtgttctgcagccaaggccatcggcaacacagaactggaaaacaagtttgctgaa
ggaataacgaagatcaagagagacattgtttttgccgccagtctctacctataa
DBGET
integrated database retrieval system
