Solea solea (common sole): 131448839
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Entry
131448839 CDS
T10853
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ssoe Solea solea (common sole)
Pathway
ssoe03040
Spliceosome
Brite
Enzymes [BR:
ssoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131448839
Spliceosome [BR:
ssoe03041
]
Complex C
Other components
Step II factors
131448839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
AAA_16
Flavi_DEAD
T2SSE
TsaE
PhoH
RSRP
ABC_tran
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
131448839
NCBI-ProteinID:
XP_058477612
LinkDB
All DBs
Position
21:8917350..8942187
Genome browser
AA seq
1325 aa
AA seq
DB search
MGVSEGDVDGCRDNFNKHWEEGGGSTVSPSLPTTAPREPPAPMSAGNAKCPPAAPSERIT
SNVHTVRIRKQSIPEIQDGSRIRSRPIWLLSFTSPEQKQDSWRMACGGIDELSQLEYLSL
VSKVCTELDNHLGISDKDLAEFVIHLAEKQQSFDGFKALLLQNGAEFTDSLIGNLLRLIQ
TMRPPSKASSSKDLDDLVKPKTEKEKLKELFPALCRANDPIPQKLLDEDDVKVAADAMKE
LEMFMPSVSGTESKSSKSRSEKVRRHSRSRSRSREKDRHRDRDRDRDRDRDRDRDRKRRH
RSRSRSRSRSRSRDRDRHRDKDRDRGKRRDKSSRCSERSPSPRKDQDRDSDRWKDKHVDR
PPPEEPSVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKG
QRVKIKVLSFTGSKTSLSMKDVDQETGEDLNPNRRRNVGPDGGEEISMRNPDRPSNLNLG
HAPEMEQDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDDETGILPKVDDEEDE
DLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREVKQAARE
AEMDSIPMGLNKHWVDPLPDVDGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQ
LSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTTRGKIGC
TQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDSE
LGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFSQYFYEAPIF
TIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDVLVFLTGQEEIDTACEILYE
RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVV
DPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTT
NVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTR
LGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKF
HQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVS
CGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELV
LTTKEYMREVTTIDPRWLVEFSPAFFKVSDPTRLSKQKKQQRLEPLYNRYEEPNAWRISR
AFRRR
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgagcgagggtgacgtggacggttgtagagacaattttaacaaacactgggaa
gaaggaggcggcagtacggtctccccttcacttccaacaacagccccacgtgagcccccc
gctcctatgtcagctgggaacgccaaatgtccccctgcagctccctcagaaaggataacc
tccaacgttcatacggtgaggatcaggaagcaatccattccagagattcaagacggaagt
agaattcggtcacgtccaatatggctgttgtcgtttacttcgcctgaacaaaaacaggac
tcgtggagaatggcgtgcggtggaattgacgagctctcccagctcgaatatttgtcgttg
gtgtcaaaagtgtgcacggagctcgacaaccatctgggaataagtgacaaagatttagct
gagtttgtcatccatctcgctgagaaacaacaatctttcgacggttttaaagctcttctg
ctccaaaatggagccgaattcacggactctctcatcggcaatttgctcaggctcattcag
acaatgcggccaccatcaaaagcatcatcaagtaaagatcttgatgatttggtcaagcca
aagacagaaaaggagaagttgaaggagttgtttccggccctttgtagagcaaatgatccc
ataccacagaagctactagatgaagatgatgtaaaagtagcagctgatgccatgaaggag
ctggagatgttcatgcccagtgttagtgggactgaatcaaaaagcagtaagagcaggtca
gagaaggtcaggcgccacagcaggagtcgcagcagaagcagagaaaaagaccgacacaga
gatcgagacagagacagggatcgagacagagatcgggacagggacaggaagagaagacat
cgttctcgatcacggtccagatccaggtctcgctccagggaccgagatcggcacagagac
aaagatagagatcgtggcaaaagaagagataaatcttcccgttgtagtgaacgttcacca
agcccgagaaaagaccaagacagagactccgaccgctggaaagacaaacatgtggaccgc
cctcctccagaagagccttctgttggggacatctataatggcaaagtcaccagcatcatg
cagtttggatgctttgttcagctcgaaggattaaggaaacgatgggagggattggtccac
atttcagaactgcgtagggagggccgtgtggccaacgtggctgatgtagtcagcaaaggc
cagagagtcaaaatcaaggtgctttctttcactggctccaagaccagcctcagtatgaag
gatgtagaccaggagacgggagaggacctgaaccccaacaggagaaggaatgtgggccca
gatggaggggaagaaatctccatgaggaatcctgaccggccaagcaacctcaacttgggc
cacgcccctgagatggagcaggatgacactttggagcgcaaaaggctaactaaaatatct
gacccagaaaagtgggaaatcaaacagatgattgctgccaatgtgctttctaaagaagag
tttcctgattttgatgacgagacagggatccttcctaaagttgatgatgaagaggatgaa
gacttggaaattgagctggttgaagaggaacccccattcctgaggggacatacaaaacaa
agcatggacatgagccccgtcaagattgtcaagaatccagatggctctctatcccaggcg
gccatgatgcagagcgctctggctaaggaaagacgcgaggtgaagcaggctgctcgtgag
gctgagatggactctattcccatggggctgaataaacactgggtcgaccccctgccagac
gttgacgggaggcagattgcagccaacatgagaggcattggcatgatgcccaatgacatc
ccagagtggaagaaacatgcctttggcggcaacaaggcctcttacggtaaaaagacccag
ctctccatcctggagcagagggagagtctgcccatctacaagctgaaggagcagctcatt
caggctgttcatgacaaccagatcctgattgtgattggagaaacaggttctggtaagacc
acacagatcactcagtacctggcagaggcaggctacaccacccgagggaagattggttgc
actcagccccgtcgtgtggctgccatgtcagtggccaagagagtctctgaggaatatggt
tgttgtctaggacaagaggtgggttacaccatccgtttcgaggattgcactagtcctgag
acagtcatcaagtacatgacagacggtatgctgttaagagagtgtttgatcgactccgaa
ctgggccagtacgccattattatgttggacgaagctcacgagaggacaatccacactgat
gttctctttggtctgctgaagaagactgtacaaaagcgcactgacatgaagctgatcgta
acatcagctacactggatgctgtgaagttctctcagtatttctacgaagcgcccatcttc
accattccgggcagaacatatccagtggaggtcctgtacaccaaagagccggagactgac
tacctggatgccagtctcatcaccgtcatgcagatccatctgactgaacctccaggtgac
gtcctggtgtttctgactggacaggaagagatcgacaccgcttgcgagatcctctatgag
agaatgaagtcgctggggcctgatgtccctgagctgattattctgcctgtgtattctgct
ctgcccagtgagatgcagaccaggattttcgatcctgcgcccccaggcagcagaaaggtg
gtcattgccaccaacattgcagagacatcactgacaattgatggaatctactacgttgtg
gaccccggcttcgtcaagcagaaagtttacaactccaagactggtattgatcaacttgtg
gtgactccaatctcgcaggcccaggctaagcagagggcaggtcgagctggcagaacaggc
ccagggaagtgttacaggctctacactgagagagcctacagagatgagatgctgacgacc
aacgtacctgagatccagagaaccaacttggccagcactgtgctctctctgaaggcaatg
ggtattaatgacctcctgtcctttgacttcatggacgctcctcccatggagactctgatc
acagccatggagcagctctacactctgggagctctagatgatgagggcttactcacaagg
ctgggtagaaggatggcagagttccctctcgagcccatgctgtgtaagatgttgatcatg
tctgtccatctgggctgcagtgaagagatgctcaccattgtgtcaatgttgtccgtgcag
aatgtcttctaccggccaaaggacaagcaagccttagctgaccagaagaaggcaaagttc
caccaacctgagggtgatcacctgactttgcttgcagtctacaactcctggaagaacaac
aagttctccaacccctggtgttatgagaacttcatccaggctcgctccctgcgcagagcc
caggacatccgcaaacagatgctgggtattatggacaggcataaattggatgtagtgtct
tgtggaaaagccacagtgcgagtccagaaagcgatctgcagtggtttcttcaggaatgca
gccaaaaaggatcctcaagagggatacagaaccctcatagaccagcaagttgtctacatt
cacccctccagtgctttgttcaaccgccagccagagtgggttgtctaccatgagttggtg
ttgaccaccaaggaatatatgcgtgaggtgaccaccatcgaccctcgctggctggtggag
ttttccccagccttcttcaaagtgtctgaccccacacgcctcagcaagcagaagaaacag
caacgtctcgaacctctgtacaaccgttacgaggagcccaacgcttggagaatctcccgc
gccttcagacgacgttaa
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