Solea solea (common sole): 131455427
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Entry
131455427 CDS
T10853
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ssoe Solea solea (common sole)
Pathway
ssoe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131455427 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssoe03041
]
131455427 (prpf40a)
Spliceosome [BR:
ssoe03041
]
Complex A
U1 snRNP components
U1 related factors
131455427 (prpf40a)
Complex B
131455427 (prpf40a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
131455427
NCBI-ProteinID:
XP_058479023
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Position
2:complement(25916001..25928157)
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AA seq
880 aa
AA seq
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MSSSEANNGPSQAPPYPGVPPSGIPPPFMGPPGIPPHYPPMGMPPMGQRPPSMTPMPPGI
IPPGMMPPMGAPPMGQMPGMMPPMMPGMMMPPRIPAAAVQPTGPPGVDSTAAAPGTASTT
NGSPPEDQPKKKSLWTEHKSLDGKTYYYNTETKQSTWEKPDDLKSTVEQMLSKCPWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTAEAAAPSITIAPAVQADITAPV
AIVTEAETAKAVTEEHLTQAVMHLTAEVKTVDVPVASSESPAATEVVKASVEVIKEERPE
LQKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFN
AYKVQTEKEEKEEARIKYKESKETFQRFLENHDKMTSTTRYKKAEQMFSELEVWSCVPER
DRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPT
FAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNRESFQKFLDELH
DHGQLHSMSAWMEMYPTLSSDIRFVNMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDI
LKDKGFLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARK
MKRKEAAFKNMLKQATPPLEPEASWEGVRERFLKESAFEDVTLESERKRIFKDFMHVLEH
ECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDDEYHKKKKRSQSKSPSERSSSGESER
SYKKSKKHKKKAKKRRHKSASPDSDTEKKGREREGKRDKDLEKDKENDKSRGKSRSDSKQ
KSPKRKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcggaggctaataatggcccgagccaagcgccaccttatccaggcgtaccg
ccctcagggatacctcccccatttatgggaccaccaggcataccacctcattaccctcct
atgggaatgcccccaatgggacagcgacctccgagcatgactccaatgcctcctggtata
attcccccaggaatgatgccaccaatgggggcacctccaatgggacagatgccaggcatg
atgccacctatgatgccagggatgatgatgccccctcgcataccagctgcggctgtacag
ccaacaggaccgcctggtgttgactccacagctgctgcacccggaacagctagtaccaca
aatggctctccaccggaagatcagccaaagaagaagtctctgtggactgaacacaaatca
ctggatgggaagacttactattacaatacagagactaagcagtccacatgggagaaacca
gatgatctgaaatctactgtagagcaaatgctgtctaaatgtccctggaaggagtacaag
tcggacacagggaagccttattattacaactcgcagacaaaggagtccagatggaccaaa
cccaaagaactggaagatctggaagctatgatcaaagcagaggagaatggaacggcggag
gcagcagcccctagcatcaccatagcccctgcagtgcaagcagacattacagcccctgtg
gcaattgtaacagaggcagaaactgcaaaagcagtcacagaggaacacctcacccaggcg
gtcatgcatctcacagctgaggtcaagacagtggatgtgccagttgcttcctcagagagc
ccagctgccacagaggtggtgaaagccagtgtcgaagtcataaaggaagaacggccagag
cttcagaagaaaacatacaaatggaacacaaaggaggaagccaagcaggccttcaaagag
ctgctgaaggagaagggtgtgtcctcaaactcctcttgggaacaggcgatgaaaatgatt
atcaacgatcctcgctacagcgcgcttcctaagctgagtgagaagaaacaggcgttcaat
gcttacaaagtccagacggagaaggaagagaaggaggaggccagaattaaatacaaagag
tccaaagagacctttcagaggtttttggagaatcacgacaagatgacgtccaccaccaga
tacaagaaagcggaacagatgtttagcgagctcgaggtttggagctgcgtgccagagaga
gacagactggagatctatgaagacgtgctcttctatcttgccaagaaagagaaggaacaa
gccaagcagctgagaaagaggaactgggaagctctaaagaacatcctggacaacatggcc
aacgtcacctaccgcaccacctggtctgaggcccagcagtacctgctagacaaccccacc
tttgctgaagacgaggagctgcagaatatggacaaggaagatgccctcatttgtttcgag
gagcacatccgagcgctggagaaagaggaggaagaagagaaacagaagactcttctcaga
gagagaagacgacaacgcaagaacagagagtcgttccagaaatttctcgatgagctccat
gaccacggtcagcttcactccatgtctgcctggatggagatgtacccaaccctgagctca
gacatccgcttcgtcaacatgctgggtcagccgggttccactccactggatctgttcaaa
ttctacgtggaagacctgaaggctcgctaccacgatgagaagaggatcatcaaagatatt
ctgaaggacaaaggcttcttggtcgaagtgaacaccagcttcgatgacttcggatcagtc
atcagctcggacaagagagccaccacgctggacgcaggaaacataaagctggccttcaac
agcttactggagaaggctgaagccagagagagggagcgcgaaaaggaggaggcccgcaag
atgaagaggaaagaggcagccttcaagaatatgctgaaacaggccacgccgccactggag
cccgaggcttcatgggagggagtaagagagcggttcctgaaagagtctgcctttgaagac
gtgactctggagtcggagagaaaaaggatatttaaggacttcatgcacgtcttggagcat
gagtgccaacatcatcactccaagacaaagaagcactcaaagaagtccaagaagcaccac
aggaagcgctcccgctctcgatcgggttcagagtcagaggatgacgagtaccacaagaag
aagaagaggtcacagtccaagtccccctctgaacgctcctctagtggagaatctgagaga
agctataagaaatccaagaagcacaagaagaaggccaagaagaggcgccacaagtctgca
tcaccagattccgacacggagaagaaaggaagagagcgcgaaggaaaacgggacaaggac
ttagagaaagataaagagaacgacaagtctcgggggaagtctcgctccgactcgaaacag
aagtctcctaaaagaaaagcagccaaagaggagggtggctgggatacgtccggcagtgag
ctgagcgaaggggagctggagaaaaggagaagaactttactggagcagctggatgcacct
tga
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