Solea solea (common sole): 131455969
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Entry
131455969 CDS
T10853
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
ssoe Solea solea (common sole)
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssoe00536
]
131455969
Glycosaminoglycan binding proteins [BR:
ssoe00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
131455969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
131455969
NCBI-ProteinID:
XP_058479878
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All DBs
Position
3:complement(16706799..16887743)
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AA seq
691 aa
AA seq
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METARGASRCVEKMEKAAPQKRQQSRTTVLNILSSLCSVASVAFCILLSINAADIQNRVV
DLESGGGEQPVIRAPGYSTDDLNSLIQQRVNEVLSQHSYENYVKIRTARQASPECNCPPG
PPGKRGRRGRNGEPGPPGPPGLQGEKGDQGDQGPRGLPGLPTLAALHSNQILTVKGDQGQ
AGPPGPPGPPGPPGPRGPPGDTGKDGPRGVPGLPGDPGETGETGPSGPEGPEGLKGSLGP
PGVPGVDGLKGDIGIPGLDGVPGAKGEMGERGEKGDLGEEGPKGDIGEKGDAGSSAAGIK
GEPGEPGRGGHKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGDHGPPGKG
ERGEIGPFGPKGSQGEAGTPGFKGSKGETGDKGDLGAAGLKGPPGQKGDQGVTEIIDYNG
NIQEALQKITSITVTGPAGPPGPIGPQGIKGDRGMPGLPGLDGERGYKGSKGDMGMPGAS
GDKGTTGLPGLPGINGAKGEKGDLGLPGPQGSSIIGPPGPSGPHGPPGPMGPHGFPGPKG
EAGLHGVKGIRGEPGHKGDRGPLGLPGASGLDGKPGIRGMDGPTGPAGPAGPKGDIGEKG
AQGEPGPRGPYGLPGAPGTPGLDGLPGLRGDKGDVGERGEKGEKGKKGKKGPKGEKGEQG
APGLDAPCPLGPDGLPMPGCWQKGVTPWLVA
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggagaccgcaagaggagcatcaaggtgcgtggagaaaatggagaaagcggcgcctcag
aagcgacagcaaagccgcacaacggtgctcaacatcctctcctctctgtgttccgtggcg
tccgtcgccttctgcattcttctcagcattaacgcggccgacatccagaaccgagttgtg
gatttggagagcgggggaggcgagcagccggtgatccgagccccgggttactccacggat
gatttaaattccctgattcagcagagagttaatgaggtgctctcgcagcactcctatgaa
aattatgtcaagattcggactgcgagacaagcatcacctgaatgcaactgcccaccagga
cctccaggaaagcgaggaagaagaggccgcaatggagaacctggacctcctggccctcca
ggtctgcagggtgaaaagggggatcaaggcgaccaaggaccacggggattgcctggtctc
cctacactggctgctttgcacagcaatcagatcctgactgtcaagggagatcaggggcaa
gcgggaccacctgggcccccagggccaccgggacctcctgggcccagagggcctccaggg
gacactggcaaagatgggcctagaggtgtgcctggtctaccaggtgatccaggggagact
ggagaaacaggaccttcgggtcctgaggggccagaagggctaaagggttccctcgggcct
cctggcgttccaggcgttgatggactgaagggggatattggcatcccaggactggacggt
gtccctggagccaagggtgaaatgggagagagaggtgaaaagggtgatctgggtgaagaa
ggaccgaaaggcgatataggcgagaagggagatgcaggttcctctgcagccggcattaag
ggtgaacctggagagcctgggcgaggtggacacaagggagagccaggacttccagggctg
cctggactcccagggataaagggtgagcctggattcctaggcccccagggagaaccagga
cttccaggcctcccagggactaagggtgagcgaggtgatcatgggccaccaggaaagggt
gagcgaggagaaatcggccctttcggaccaaagggttcacaaggagaggctggtacacct
ggttttaaagggtcaaagggtgagactggagataaaggagatttgggagccgctggcctg
aaggggcctcctgggcagaaaggcgaccaaggggtgacagaaatcatcgactacaacgga
aacattcaggaggctttacagaagattacctctattacagtaacgggtcctgctgggcct
ccagggccaattggaccacagggtataaagggggatcgtggtatgcctggtctccctgga
ctcgatggagagcgaggctacaaaggttcaaagggagacatggggatgcctggagcttca
ggggacaaaggaacaactggtttacctgggctccctggtatcaatggagccaaaggtgaa
aagggagatttagggctacctggtcctcagggttcttcaatcattggccctccagggcca
tcagggcctcatggaccaccaggacccatgggaccccatggtttcccaggaccaaagggt
gaagccgggctacatggtgtgaagggtataagaggggagccaggacacaaaggcgatcgt
ggacctttgggtctccctggagcctccggcttggacggcaagcccggaattaggggcatg
gatggacctacaggtccagctggtcctgctgggccaaagggtgacataggtgagaaagga
gcacagggcgagccagggccaaggggaccttatggacttcctggagctccaggaacacca
ggcttggacgggttaccaggcttaaggggcgataaaggcgacgttggggaaagaggagaa
aagggggagaagggaaagaagggcaaaaaagggcctaagggcgagaaaggagaacagggt
gcccctggattagatgcaccctgcccattgggcccagatggtttaccaatgcctggatgc
tggcagaagggagtcacgccatggctggtagcctga
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