Solea solea (common sole): 131456476
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Entry
131456476 CDS
T10853
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ssoe Solea solea (common sole)
Pathway
ssoe03013
Nucleocytoplasmic transport
ssoe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131456476
03015 mRNA surveillance pathway
131456476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssoe03019
]
131456476
Enzymes [BR:
ssoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
131456476
5.6.2.5 RNA 5'-3' helicase
131456476
Messenger RNA biogenesis [BR:
ssoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
131456476
mRNA cycle factors
Common to processing body (P body) and stress granule
131456476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
NAT10_TcmA_helicase
DEAD
SRP54
UvrD-helicase
UvrD_C_2
AAA_16
AAA_22
Hydin_ADK
Motif
Other DBs
NCBI-GeneID:
131456476
NCBI-ProteinID:
XP_058480827
LinkDB
All DBs
Position
1:9154847..9168400
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AA seq
1114 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEADLLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDGLLQNGDDPVIKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETLLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFSLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLAKQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMESMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRMKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRMSNMYFQTHDQIGMIGTGPGPMSSMNI
PIPFNLVMPPIPPSGYMGQMNGPTGGRGGGMKGKASGGGGGGGGSRGGRQRNRSNIGGGN
GGMDRGHGGHMSVSQASQDLGSQSFSQGPLTQGYMNMSQPSQMSQPGLSQPELSQDSYLG
DEFKSQIDVALSQDSTYQGERAYQQGGVTGLSQY
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggcccagctcgcagactctgacgttcctggacaccgaggaa
gccgacctgcttggagcggatacccagggttccgagtacgatttcaccgacttcaccctg
ccaagccagacccagacccaaggccagacccaaagccagctcgacagccaggttaatggt
ccagacggattgctgcagaatggagatgaccctgtaataaaagccagtcaactgctggca
gagctgaactttgaggaggatgaagaggacacctactacaccaaggaccttcctgtacat
gcatgcagttattgtgggattcatgatccagcctgtgtggtttactgcaataccagcaag
aagtggttttgtaacggccgtggaaacacatctggcagccacattgtaaaccacctggtg
agagcaaagtccaaagaggtaacgctgcataaagatggccctctgggggaaacactgttg
gagtgttacaactgtggttgtcgcaatgtcttcctgctgggcttcattcctgctaaagct
gattctgtagtggtgctactatgcaggcagccatgtgccagtcagagcagcctgaaagac
atcaactgggacagctcacagtggcagcctctcatccaggaccgctgcttcctgtcctgg
ctggtcaagatcccctcagagcaggagcagcttcgtgcccgccagatcactgcccagcag
atcaacaagctggaggaactctggaaggataatcccactgcgaccttggaggatctagag
aagcctggtgtggatgaggagccccagcacgtcctgctccgttatgaagatgcttatcag
taccaaaacatctttggtcctctggtgaagttggaagctgactatgacaagaaactcaaa
gagtctcagacccaagacaacattacagtcagatgggatttgggactgaataagaagagg
attgcatatttcagtctgccgaagacagactcagatatgcgactgatgcagggagatgaa
atttgcctgaggtacaaaggagacctggctcctccatggaaaggaattggacatgtcatc
aaagtccctgacaactatggtgatgagattgccatagagttgaggagcagtgccggtgca
ccagtggagattccacacaactttcaggtcgactttgtgtggaaatctacttcctttgac
agaatgcagagtgccctgaagacatttgctgtggatgagacctcagtgtcaggttacatc
tatcataaacttttaggacatgaggtagaagatgtggtcatcaagtgtcagctgcctaaa
cgcttcactgcgcaaggcttgcctgatctgaaccactcccaggtctatgctgtgaagaca
gtgctgcagcgccccctcagtctgatccagggacctcccggcacagggaagactgtaacc
tctgctaccattgtctaccacctagcaaaacagggtaacgggccggtgctggtgtgcgct
cccagtaacattgctgtcgaccagctcacagagaagatccaccagacgggactcaaggtg
gtgaggctgtgtgccaagagcagagaagccattgactcacctgtgtccttcctggctttg
cacaaccagacccgtaacatggagagtatgccagagcttcagaagctccagcagctgaag
gatgagactggcgagctgtcgtcctctgacgagaagcgctaccgagctctgcgacgcact
gctgagagggagctgcttatgaatgctgatgtgatctgttgcacctgtgtcggggcgggg
gatcctcgtctggccaagatgcagttccgttcaatcctgatcgatgagagcacgcaagcc
actgaaccagagtgcatggtgcctgtcgtcctgggggcaaagcagttgattttggtgggt
gatcactgccagctgggtcctgtggtgatgtgtaagaaggcagctaaagcaggtctgtcc
cagtctctgtttgagcgtctggtagttctggggatccggcccattcgtctgcaggtccag
tatcgtatgcacccagcactcagcgccttcccttccaacatcttctatgaaggttcgctg
caaaatggagtcactgctgctgatcgtatgaagaaaggcttcgacttccagtggccacag
ccggacaagccgatgttcttttacgtcacacaaggccaagaggaaattgccagctctgga
acatcctatctcaacaggacagaggcagcaaatgtggagaaaataaccacgcggctgctg
aaggctggagctaaacctgatcaaatcggcatcattaccccctacgagggtcagaggtca
tacctggtccaatacatgcagttcagtggctccctccacaccaaactctaccaggaagtg
gagatagccagtgtggatgcctttcaaggcagagagaaagacttcatcatcctgtcctgt
gtaagagccaatgagcaccagggcatcggcttccttaatgatccccgacgtctaaatgtg
gcactcaccagggccaggtatggtgtgattatcgtgggaaaccctaaggccttgtccaag
cagccgctgtggaaccacctgctcaactactacaaggagcaaaaggttctggtcgaaggc
cctctcaacaacctgagggagagcctcatgcaattcagcaagcctcgcaagttggtcaac
accatcaaccctgggggtcgtttcatgagcactgccatgtatgatgccagggaggctctc
attcctgggtctgtctatgaccgcagcagtaatgggcgtatgtctaacatgtacttccag
acccatgaccagatcggtatgattggcacgggcccaggtcctatgagctccatgaacatt
cccatccccttcaaccttgtgatgcctcctatacctccctctggctacatgggacagatg
aacgggcccacaggaggtcgcggtggaggtatgaagggcaaggcaagcggtggaggtgga
ggtggaggtgggtctagaggtggccgccaaagaaaccgcagcaacataggtggagggaat
ggaggaatggaccgtgggcacggaggacatatgagcgtcagccaggccagccaggacctg
ggctcccagtccttctcccagggacctttgacacaaggttacatgaacatgagccaacca
tcacagatgagtcagcctgggctctcccagcctgaactctcccaggacagttacctagga
gatgagttcaagtcccagattgatgtggctctgtcccaggactccacctaccagggggag
cgggcctaccagcagggtggtgtgactggactgtcccagtactag
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integrated database retrieval system
