Solea solea (common sole): 131458798
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Entry
131458798 CDS
T10853
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ssoe Solea solea (common sole)
Pathway
ssoe03440
Homologous recombination
ssoe03450
Non-homologous end-joining
ssoe04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
131458798 (rad50)
03450 Non-homologous end-joining
131458798 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
131458798 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssoe03032
]
131458798 (rad50)
03400 DNA repair and recombination proteins [BR:
ssoe03400
]
131458798 (rad50)
DNA replication proteins [BR:
ssoe03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
131458798 (rad50)
DNA repair and recombination proteins [BR:
ssoe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
131458798 (rad50)
BRCA1-C complex
131458798 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
131458798 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
ABC_tran
zf-met
AAA_29
AAA_22
AAA_16
AAA_13
Motif
Other DBs
NCBI-GeneID:
131458798
NCBI-ProteinID:
XP_058484046
LinkDB
All DBs
Position
4:complement(21285950..21306935)
Genome browser
AA seq
1311 aa
AA seq
DB search
MSKIDKMSILGVRSFGVEDKDKQVISFLAPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFTDVNGEKVTVQRSMSCTQKAKSNTFKSLEQVITR
FKGGEKVSLSSKCGELDREMISCLGVSKPVLNHVIFCHQEESNWPLSEGKALKDKFDSIF
AATKYIKALDTMRQLRLAQNHTVKECQVELRYLKQNKEKAQQIRETVATKEAQLMASKDN
VQQIEGKIEPLENRLIDIDTRLGKVIKLDNEIKALESRKKQMEQDNRELEETMEQVFQGS
DEQLQELYQNHQRTVKEKERRLTDCQKELERAGRECQRLNRVKADLLVEQGRLQLEADRH
TQNIKNRDTQVRQLSSFLDMEGYDRPPFTALQLQSFNRHVTQRLEQEKETISQVMADLEG
KEQQKQQSIDEMRDKKTGLERTVELKRDQQGKKQQELRNVRAELQRLEGSSSRLQQLENE
LAKVERELQGVVESSNVEELKAEVVELQREKAQLDRVQRQLDQEMEMLNTHTTARTQMEM
LKKDKTEKEDQVRKIKSRHSEDLVSLLGHFPNKRELEDWIYTKSREINSTRDKLAKLNKD
LASNEQNKSHIASELRKKEQQLVSDEEKFFNVCGSQDLEQDLGKLQDDLEKVSKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSESDLQDVISDMQSKLRLVPDKLKNTEQDLK
RKERKRDEMMSLKPVRQSIVQFQEKELPELRNRLQSVNREIERLKGDVEEQENVLGVLMS
EEETAKACLQDISLMDRYLMDLKEVERKIAQQAAKLQGVDLTRTIQQVSQEKQETQHKID
TTSSKMELKRKLIQDQQDQIQMLKSTVNETKAEKLQLSSDMQKQQQLEEQSVEFTTEIQA
LTRDIREAKEQLSPLSAALEKLQQEKQELVERKRQRQEEGQEKINAMKDRVKAITTLERD
ITKYNDEGKDEYKERKESELQETNTQLHDAEKQKEKISKEMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVVAKHEARMKEMGNMQVFELRQERREAERKLEDLKKNRSIALGRQKG
FEEEIMHYRKELREDQYDKADERYKNKMIVMRTTELVIKDLDLYYKALDQSIMKFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSAAKRRVYNYRVVMVKGDAALDMRGRC
SAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQRN
FQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSITSLSSYLH
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaatagataagatgagcatccttggggtgaggagctttggggtcgaggataaa
gacaaacaagtaatatccttcctcgctcctttgactgtgctggttggacccaatggagcg
ggaaaaacgactattattgagtgtctcaagtatgcaacgtcaggtgaacttcccccagga
tctaaaggaggggcctttgttcatgatccaaaggacgcccatgagacagacgtgcgcgca
cagattcgccttttattcactgatgttaatggagagaaagtcaccgtccagcgctccatg
tcatgtactcagaaggcaaagagcaacaccttcaaaagcttagagcaggtcatcacacga
tttaaaggtggtgagaaggtgagcttgtcgtccaagtgtggtgaactggaccgggagatg
atttcttgcttgggtgtatcaaagcctgtcctgaatcatgtcatcttctgccaccaagaa
gaatccaactggccacttagtgagggcaaggcactcaaagacaagtttgactccatcttt
gctgcaacaaagtatatcaaagctctggacacgatgcgtcagctgcgtctggcacagaac
cacacagtcaaagagtgtcaggtcgagctgcgctacctgaagcagaataaggagaaggcc
cagcagattagggagactgtagccaccaaggaagctcagctgatggcctcgaaggacaac
gtacagcagatagagggcaagatagagccacttgagaatcgactgatagatattgacaca
agacttgggaaagtgataaagctggacaatgaaatcaaagccttggagagcaggaagaaa
caaatggagcaagacaatagggagctggaagaaacaatggaacaggtgtttcagggttca
gatgagcagctgcaggagctttatcagaaccaccagaggacagtgaaagagaaggagcgg
aggctgacagactgccagaaggagctggagagagctggccgagagtgtcagagactcaac
agagtcaaggctgatctccttgtcgaacaaggtcgtcttcagctggaggctgaccgccac
acccaaaacatcaagaaccgtgacactcaggtccgccaattgtcatccttcctggacatg
gagggctatgaccgaccgccctttaccgctcttcagctccagagctttaaccgtcatgtc
actcagagactggagcaggaaaaagagacaatcagtcaggttatggcagacctggaggga
aaagagcagcagaagcagcagtccattgatgaaatgagggataagaaaactggtctggag
agaaccgtggagctcaagagagaccagcagggaaagaagcagcaagaattaaggaacgtc
agagcagagctgcagaggctggagggttcatcctctcgcctgcaacaactggagaatgaa
ttggctaaagtggagcgagagctgcagggcgtagtggagagctccaatgtggaggaactg
aaggctgaggtcgtggagctccagagagaaaaggctcaacttgaccgtgtacagaggcag
cttgaccaagaaatggaaatgctcaacacacacactactgcgcgcacacaaatggagatg
ctgaagaaagacaagaccgagaaggaagaccaggtgcgtaagatcaagtctcgtcacagc
gaggacctggtgtcattactgggtcactttcccaacaagcgagagctggaagactggatc
tacaccaagtctcgggaaattaacagtaccagagacaaacttgccaaactcaataaggac
ctggcatcaaatgagcagaacaaaagccacattgcttcggagctgcgtaagaaggagcag
cagttagttagcgatgaagagaagttcttcaatgtgtgtggcagtcaggatctggagcag
gacctgggcaaactgcaggatgatctggagaaggtatccaaacaaagagccatgctagct
ggagccacggcagtgtacacccaattcatcagccagctgactgaggagagagaaccctgc
tgccccgtttgccagcggacgttcccgtcagagtccgatctgcaggatgttatcagtgac
atgcaatccaaactacggctcgtgccagacaagctgaaaaacaccgagcaggacctgaag
aggaaggagaggaagagagatgagatgatgtctctcaaaccggtcaggcaatccattgta
caatttcaggagaaggagttgcccgagttgagaaaccgtctgcagagtgtgaacagagaa
attgaaaggctgaagggagatgtggaggaacaggagaacgtgcttggtgtcctcatgtca
gaggaggaaacggccaaggcctgcctgcaggacatttctctcatggacagatacttgatg
gaccttaaagaggtggagaggaaaatagctcaacaggcagccaaactgcagggagtagac
ctgaccagaaccatccagcaagtcagtcaggaaaaacaagaaactcagcacaagatagat
acaacctccagcaagatggagctgaagcgtaaactgatccaggaccagcaggatcagatt
cagatgctgaaaagtacggtgaacgagacgaaagcagagaagctccaactgagcagtgac
atgcagaaacagcagcagctggaagagcagagtgttgagttcaccaccgagatacaggct
ttaaccagggacatcagggaagcaaaggagcaactttcacctttgtctgccgcactggag
aagctccagcaggagaagcaagagctggtggagcgcaagaggcagaggcaggaagaaggg
caggagaagatcaatgccatgaaagacagagtgaaggctatcaccaccttggaaagagac
atcaccaaatacaatgatgagggcaaagatgaatacaaggagcgaaaagagtctgaactg
caggagacgaacacgcagctacatgatgctgagaagcaaaaagaaaagatcagcaaagag
atgggaaacatccgtcaggacatcgacactcagaaggttcaggagcgctggttgcaggac
aacctgaccttgaggaagcgtgtggaggagttgaaggaggttgtggctaaacatgaggct
cgcatgaaagagatgggcaacatgcaggtctttgaactccgccaagaacgacgtgaagca
gaacgcaagttggaagacttgaagaagaatcgcagtatcgcactgggtcgccagaaaggc
tttgaggaggagataatgcattacagaaaagagcttcgtgaagatcagtacgacaaagcc
gacgaacgctacaaaaacaagatgatcgttatgaggaccaccgagctggtcattaaggac
ctggatctctactacaaggccctcgatcaatcaatcatgaaattccacagtatgaagatg
gacgagatcaacaagattatcagagacctatggcgtagcacctacaggggtcaagatatt
gaatatgtggagatcaggtctgatgtggatgagaactcgtctgctgctaagcggagggtt
tacaactacagagtagtgatggtgaaaggagacgcggctttggacatgagagggcgctgc
agtgcgggtcaaaaggtgttggcgtccctgatcatccgtctagctctggcagagaccttc
tgtctcaactgtggtatcctagccctggatgaacccaccaccaacctcgaccgggagaac
atcgagtcgctggcacacgcccttgtagaaatcatcaagagtcgctctcgccagcgcaac
ttccagctgctgatcatcacccacgatgaggactttgtggagctgctgggtcgctccagc
tacattgaacatttctaccgcatccgcaagaaccaggaccagaactctgaaatcacaaag
tgcagtatcacttccctttcgtcctacctccactga
DBGET
integrated database retrieval system
