Solea solea (common sole): 131463237
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Entry
131463237 CDS
T10853
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
ssoe Solea solea (common sole)
Pathway
ssoe04382
Cornified envelope formation
ssoe04510
Focal adhesion
ssoe04512
ECM-receptor interaction
ssoe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
131463237 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
131463237 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
131463237 (col4a3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
131463237 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssoe04147
]
131463237 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
ssoe00536
]
131463237 (col4a3)
Exosome [BR:
ssoe04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
131463237 (col4a3)
Glycosaminoglycan binding proteins [BR:
ssoe00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
131463237 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
131463237
NCBI-ProteinID:
XP_058491014
LinkDB
All DBs
Position
7:complement(19057730..19096326)
Genome browser
AA seq
1662 aa
AA seq
DB search
MERPGTQRRGIKPLQLLLPLVVVVLCCTPGDTKTGCHCNGKALCHCDGVKGQKGEPGYGG
ERGLPGMIGYPGNEGPHGFSGEKGEQGAAGPSGPKGSRGLSGKPGYPGPPGLPGLPGSEG
PIGQPGFPGCNGTKGDVGYPGFPGPLGTVGLPGLPGLQGTKGDSIVYPISPDIKGQMGKQ
GLKGREGLRGDPGQLGPSGPPGPAGIPGIPGFPGSPGEKGQEGPNPMILGPRGQKGDRGL
PGIPGQKGIKLYAEGPKELKGEPGEKGEKGSHGLPGVAGKLGRKGEKGEQGDPGTFGKQG
KDGLIGALGIPGDTGDVGYLGPPGIEGTQGEKGERGPPGLPGETIWNHRFLKGQRGVSGV
RGPQGAPGEQGIIGFPGMQGETAAAPAGLPGAQGPPGLTGPKGEQGEPGSLMYGTPGVTG
IPGALGAKGEPGEPGIPDFLSGDVGAAGDKGTRGEEGQMGEKGETCFVCADGSGSPGPPG
KPGESGEPGLPGSDGFPGPIGDKGVKGIRGSPGPQGPFGFPGIPGSPGPTGKPGIMNRVG
EKGEEGAQGGPGPVGIEGTNGPVGIPGPKGVQGQKGNPGPPGQKGDRGPLGESGPSGLIG
QRGPPGPPGIGVPGPPGPKGNIGVLGQRGSPGRPGEKGSPGEIKTSPGDPGQKGEKGFPG
NPGPEGVTGLPGGPGPVGPKGEKGDEGFSVQGPPGFPGVKGVKGPPGAPGLSSFGIKGRA
GPSGPPGMPGPKGDRGAGLPGQQGQSGPPGEDGSVGSQGNPGPHGPEGVPGLPGQDGRPG
PRGFSGLDGVPGPTGVTGLCLDGAPGPKGEEGQIGSIGFPGVCGSKGVQGDSGLPGVGPL
GPPGPYGTPGLNGLPGPEGGFGLKGLRGTDGKPGCPGIKGDMGPPGPLGCAGDDGKPGEP
GRVGPKGEMGIDGIRGSQGPPGPQGDQGERGPPGLETSVTTFGDPGVDGNPGPLGLTGAK
GDRGIPGPQGLDGSNGVPGEAGPQGLPGDPTRDGEIGPLGLTGLPGYPGEMGRPGLKGEK
GSLGPSGEAGSDGTPGSGGPKGAKGEPSLPGLGIKGYTGQKGNSGCSGPLGSKGRTGDSG
NIGSPGEYGPCGPKGYYGPVGCRGPPGTVGEKGSDGPPGKTGPPGPPGLQGNKGAPGDPG
LPGFRGNQGQDGIPGPPGEKGAMGAPGFGPRGPEGQQGQPGSVGDQGLPGTCGPPGPSGP
GGNAGYPGPPGPSGPPGSPGPEGLCTAGEKGAHGVSGAQGPKGPPGCMGPPGPPGPGYKG
DKGSIGAIGNPGPTGYPGDPGPQGQPGKDGTPGLPGPKGKMGETGVIGPFGLKGDAGPQG
DAGFQGPPGLPGCQGLRGMDASREVRMVPGDEGLPGVQGPPGERGPPGASGRPGCPGVKG
SKGQVGIRGPGGRPGPKGDQGDQGLPGTKGIPGTCGLLGAKGLPGPPGPSGDAPERNGFL
FTRHSQNLVIPSCPAGSSQVYSGYSLLFINGNNRAHGQDLGTLGSCLPRFTTMPFLFCNT
DNTCRYASRNDYSYWLSTNETLPGSVPFITEDLLESYISRCIVCEARANVITVHSQTNFV
PSCPSGWDRLWLGYSFVMETGVGAEGSGQPLSSPGSCLEFFRKIPFIECHGRGSCNYYTD
SYSYWLAALNPSDMFSKPKPQTVTGEFPDSLISRCQVCMKRL
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atggagcgcccgggcacccagcggcgggggatcaaacctctacagctgctgcttccgctg
gtggtggtggtgctctgctgcactccaggagacaccaagacagggtgtcactgcaatggg
aaggcgttgtgtcactgtgatggggtcaaaggtcaaaagggtgaacctggttacggtgga
gaacggggacttcctggaatgattggttaccctggaaatgagggtccccatgggttttcc
ggagagaagggtgagcagggagcagcaggaccttcaggaccgaaaggctctcggggtctt
tcaggaaaacctggatatccaggacctccaggactgccgggacttcctggaagtgaagga
cccattggacaaccaggattcccaggatgcaatgggacaaagggcgatgttggttacccc
gggttccctggacctctgggaaccgttggccttcctggtctgccaggactgcagggtaca
aagggagactcgatcgtctaccccatttctccggatattaaaggacaaatgggaaaacaa
ggactgaaaggacgagagggactgaggggagatccaggtcaactcggcccttcaggacca
ccaggacctgcaggaattcctggaattccagggtttccggggtcaccaggagagaaaggt
caggagggtcccaatcccatgattctaggtcctcgaggacagaagggtgatcgtggactt
ccagggatccctggacagaaaggaataaaactgtatgctgaaggacccaaagagctgaag
ggagaacctggtgaaaaaggagagaagggttcccatgggcttcctggtgtcgctgggaaa
cttggaaggaagggagagaagggtgaacaaggcgacccaggcacatttggtaaacaagga
aaggacggactcatcggagcgcttggaattccaggagacacaggggatgttgggtacctt
gggcctcctggtattgaaggaacccagggggagaaaggtgaacgtggtcctccaggtctt
ccaggagagactatctggaatcacaggtttctgaagggtcagcgtggtgtctccggggtc
cgtggcccccaaggagcccctggagaacaaggaatcattggttttcctggaatgcagggt
gagacagcagcggctcctgctggacttccaggagctcagggccccccaggccttacaggg
cccaaaggagaacaaggagagccagggtccctcatgtacggcaccccaggggtgacagga
atcccaggggctcttggagccaaaggagaaccaggagaaccgggaataccagattttctg
tcgggagatgtcggtgctgcaggagataaagggaccagaggggaagaggggcagatgggt
gaaaaaggagagacatgcttcgtttgtgctgacgggtccggctcccccggacctccgggt
aaaccaggagagtcaggtgaacctgggctgccagggtccgacggttttccaggaccaata
ggtgacaaaggcgtcaaaggtatccgaggatcacctggtccacagggcccctttggtttc
cccggcatcccagggtccccaggacctactggtaaaccagggatcatgaacagagtagga
gaaaagggtgaggaaggagcgcaggggggaccaggaccagtgggtatcgagggtacaaat
ggacctgtaggtataccgggaccaaaaggtgttcaaggacagaaaggaaaccctgggcct
ccaggacagaaaggtgacaggggcccacttggggagtctggtcctagcgggctgataggg
cagaggggacccccagggcctcctggtattggtgttccagggcctccaggacctaaaggc
aacataggggtcctgggccagagaggaagtcctggaagaccaggtgagaaaggttctccc
ggagaaatcaagacatctccaggagatccaggacagaaaggagagaaaggttttcctgga
aatcctggacctgaaggagtgacaggacttcctggtggtcctggacctgttggtcctaag
ggagaaaaaggagatgaagggttttctgtacaggggcccccaggcttcccaggggtcaaa
ggagtgaaaggtcctccaggagctccaggtttatcaagttttggtatcaagggacgtgcg
gggccgtcagggccaccagggatgccagggcctaagggagacagaggtgccggccttcca
ggacagcagggtcagtctggacctccgggagaagatggttctgtgggatctcaaggaaac
cctggacctcatggaccagagggagttccagggcttccgggacaagacggacgaccggga
cctagaggttttagtggtctagacggtgtccctggcccaactggcgttactggactctgt
ttagatggggctcctggaccaaagggagaggaaggacagattggctccattggcttccca
ggggtctgtggctcaaagggggtgcagggtgattctggactgccaggtgtgggacccctg
ggtcctccagggccatatgggactccagggcttaatggacttcctgggccagaaggaggc
tttggactgaaaggccttagggggactgatgggaagccaggatgcccaggcatcaaaggt
gacatgggtccgcctggacctcttgggtgtgcgggggatgatggaaaaccaggagagcca
ggacgagtaggaccaaaaggtgagatgggcatagatgggatcaggggttctcagggccct
ccagggcctcagggggaccaaggggagagaggacctccaggcctcgaaacttctgtaacg
acgtttggagatcctggagttgatggaaatccagggcccctaggacttactggcgctaaa
ggagacaggggcatccctggacctcaaggacttgacggcagcaatggcgtacctggagaa
gctgggccacaaggacttcctggagaccccaccagagatggggaaattggtcctcttggt
cttaccggtctccctgggtacccaggggaaatgggcaggccaggattaaagggtgagaaa
ggctctttgggcccttctggtgaagctggttcagatggtacaccagggtcaggaggacca
aaaggtgctaaaggagaaccaagtctacctggacttggaataaaaggatatactggacag
aagggaaattcaggatgttcgggacctttaggttcaaagggaagaacaggagactctggg
aacattggttctccaggagaatatggcccttgtggccccaaaggatactatggtcccgtg
ggatgcagaggtcctccgggaactgtgggtgaaaaaggtagtgatggtccaccagggaaa
acaggccctccaggacccccaggactacaaggcaataagggggctcctggagaccctggt
ctaccgggtttcagaggaaaccagggacaagatgggatacctggacctccaggagagaaa
ggagccatgggagctcctggatttggtccccggggcccagaggggcagcaaggtcaacct
ggctctgtcggagatcagggtcttcctgggacctgtggacctcccggtcctagtggtcct
gggggaaatgcaggttatcctggtcctcctggaccctctggtcctcctggctctcctgga
cccgagggactctgcactgcaggagaaaaaggagctcacggggtctctggagcacaagga
ccaaaaggtccccctggctgtatgggacctcctggtcctcccggtcctggttataaagga
gacaagggaagtataggagcaataggtaacccaggaccaactggttaccctggcgaccct
ggtccacagggccagccgggtaaagacggaaccccgggtctacctggacccaaaggcaag
atgggagagactggtgtcattggaccttttggtttgaagggggatgcggggccccaaggt
gatgctggctttcaaggacctccaggactacctgggtgtcaaggactgaggggtatggat
gcatccagagaggtgaggatggttccaggagatgaaggcttgcctggagttcagggaccc
ccaggagagagaggacccccaggggccagtgggagaccaggatgtccaggtgtgaagggc
agtaaaggtcaggtgggtatcagaggaccaggtggtcgccctggacctaaaggggatcag
ggagaccaaggactacctggaacaaaaggtatcccaggtacatgtggtctcctcggtgcc
aaaggtcttccgggtccaccgggtccgagtggggatgcaccagagaggaatggcttcctg
ttcaccagacacagccagaaccttgtcatcccatcatgccctgcaggatccagtcaggtg
tacagcggttactcgctgctgttcatcaacggaaacaaccgagcgcacggacaagacctg
ggtacgttaggcagctgtctccctcgcttcaccaccatgcccttcctgttctgcaacact
gacaatacttgtcgctatgcctcacgtaacgattactcctattggctgtccaccaatgaa
acactaccgggcagcgtccccttcatcaccgaagatttactggagagttacatcagcagg
tgtattgtatgtgaggccagagccaacgtgatcaccgtccacagtcagaccaattttgtc
ccgagctgtccctctgggtgggatcgtctttggttgggatactcctttgtgatggaaaca
ggagtgggggccgaggggtcaggacagcctctgtcttcccctggatcttgtctggaattc
ttcaggaagattcccttcattgagtgtcatggcagaggatcctgcaactactacactgac
tcatacagctactggctggctgctctcaaccccagcgacatgttcagtaaacccaagcct
cagactgttacaggagagtttccagacagtttgatcagccgctgtcaagtgtgtatgaag
aggctgtga
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integrated database retrieval system
