Solea solea (common sole): 131465400
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Entry
131465400 CDS
T10853
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ssoe Solea solea (common sole)
Pathway
ssoe03013
Nucleocytoplasmic transport
ssoe03015
mRNA surveillance pathway
Brite
Enzymes [BR:
ssoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
131465400 (upf1)
5.6.2.5 RNA 5'-3' helicase
131465400 (upf1)
Messenger RNA biogenesis [BR:
ssoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
131465400 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
131465400 (upf1)
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
131465400
NCBI-ProteinID:
XP_058494018
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Position
9:15094242..15109149
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AA seq
1100 aa
AA seq
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MSVEAYGPSSQTLTFLDTEEADLLGADTQGSEYDFTDFTLPSQTQTQGHTQSQVDSQVNG
PDDGLLNGGIEDSVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAPGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNTAGRPSNMYFQTHDQIGMIGAGPGHMA
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQKMRGNHGAGQGNGPNS
QASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagactctcaccttcttggacaccgaggaa
gcggacttgctcggagcagatacccagggctccgagtacgatttcactgatttcaccctg
ccaagtcaaacgcaaactcaaggccacacccaaagccaggtggacagccaggtaaacggt
cctgatgacggactcctcaacggtggaatagaggactctgttgctaaagccagccagctg
ttggccgagcttaactttgaggaggatgaagaagacacatactacaccaaagacctgcct
gttcacgcatgcagctactgtggtatccatgatccagcatgtgtggtgtactgcaatacc
agcaagaagtggttctgtaatggacgtggcaatacatctggcagccacattgtgaaccac
ttggtgagagccaaatgcaaagaggtgacactgcataaagacggcccgctgggcgagact
gtgcttgagtgttacaactgtggctgtcgaaatgtcttcctgcttggtttcatcccggcc
aaggctgattctgtggtggtgttactctgcaggcagccatgtgccagccagagtagctta
aaagacataaactgggacagctctcagtggcaaccactgatccaagatcgctgctttttg
tcctggctggttaagatcccgtcagaacaagagcagctacgagcccgtcagatcaccgct
caacagatcaacaagctggaggagctctggaaggacaatcccactgccaccttggaagac
ctggagaaaccgggcgtcgatgaggaacctcagcatgtgttgctgcgctacgaggatgcc
taccagtaccaaaatatctttggccctttggtcaaactggaggccgactacgacaagaag
cttaaggaatcccagacccaagacaatataacagtcaggtgggaccttgggttgaataaa
aagcggattgcctatttcacactgcccaagacggattcaggtgatatgcggctgatgcag
ggtgatgaaatctgcctccggtacaagggagatctggctccactgtggaaaggcattggc
catgtcatcaaagtccctgacaactatggggatgaaattgcaattgagctgagaagcagt
gtcggagcacctgtagaaatcccgcataacttccaggtggactttgtgtggaagtccact
tcctttgacaggatgcaaagtgccctgaagacatttgcagtggatgagacctctgtgtct
ggctacatttaccacaaactgctgggccacgaggtggaggatgtcaccatcaagtgccag
ctgcctaagcgattcactgccccgggcctgcccgacctcaatcactcacaggtgtatgct
gtaaagacagtgctgcagaggcctctcagtctgattcagggtcctcccggcactgggaag
actgtgacgtctgccaccattgtttaccacctgtcccgacagggaaatggccctgttctg
gtgtgtgctcccagtaacattgctgtggatcagttgactgagaagattgacaaaactggg
ctgaaggttgtcaggctgtgtgccaagagcagggaggccatcgagtcaccagtgtcattt
ttggcactgcacaaccagatcagcaacatggacagtatgccagagcttcagaaactgcag
cagctgaaggatgagactggtgagctgtcatctgctgatgagaaacgctacagggctttg
aaacgcactgctgagagggagctgctcatgaatgctgatgtgatctgttgcacctgtgtc
ggggctggagacccccgccttgccaagatgcagttccgctccatcctgatcgatgagagc
acccaggccaccgagccagagtgtatggtgcctgtggtgttgggagccaagcagctcatt
ttggttggtgaccactgccagctgggtcctgtggtgatgtgtaagaaggcagccaaggca
ggtctgtcccagtccctgtttgaacgcctggtggttctggggatccggccaattcgcctc
caggtccagtaccgtatgcacccagctctcagtgccttcccctccaacatcttctatgag
ggctccctgcagaatggtgtcaccgcagctgaccgcattaaaaaaggctttgacttccag
tggccacagccggacaagcccatgttcttctatgtgactcagggccaggaggaaattgcc
agctctggaacctcctacctcaacaggactgaggctgcaaacgtagagaagatcacaacc
aggctgttgaaggccggagccaaacccgaccaaatcggcatcatcaccccttatgagggt
cagcgctcttacctggtccaatacatgcagttcagtggctccctgcacaccaaactgtat
cagcaagtggaaattgccagtgtggatgccttccagggaagagagaaggacttcatcatc
ctgtcttgtgttcgtgccaatgagcatcagggcatcggcttcctgaacgaccctcgccgt
ctcaacgtggcgctgaccagagccaagtatggtgtgatcatcgtggggaaccccaaggcc
ctctctaagcaaccgctgtggaacaacctgctgaacaactacaaggagcagaaggtcctg
gtggaggggcccctcaacaacctgagggagagtcttatgcagttcagtaaaccacgcaag
ctggtcaacaccatcaaccctggaggacgcttcatgagcactgcaatgtatgatgcccgc
gaggccctcatccctggctctgcttatgaccgcagcaacactgctggacgtccatccaac
atgtactttcaaactcatgaccagatcgggatgattggggcgggccccggtcacatggct
gcgatgaatatccccatacccttcaacctggtgatgccaccaatgcctccacccagctac
ctgggtcagaccaacggccccgctgcaggtcgaggcgctatgaagggtaaacctggacgt
ggcggacggcagaagatgcgtggaaaccacggtgctggtcagggaaacggacccaacagc
caggccagccaggatggggcctcgcagtccttctcccagggaccattgacacaaggatac
atctccatgagccagccgtctcagatgagccagcccggcctctcacagccagagctctct
caggacagctaccttggcgatgagttcaagtctcaaattgacgtggctttgtcccaggac
tcaacttaccagggtgaacgtgcataccagcatggtggcgtgacgggactgtcacagtat
taa
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