Solea solea (common sole): 131465400
Help
Entry
131465400 CDS
T10853
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ssoe Solea solea (common sole)
Pathway
ssoe03013
Nucleocytoplasmic transport
ssoe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131465400 (upf1)
03015 mRNA surveillance pathway
131465400 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssoe03019
]
131465400 (upf1)
Enzymes [BR:
ssoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
131465400 (upf1)
5.6.2.5 RNA 5'-3' helicase
131465400 (upf1)
Messenger RNA biogenesis [BR:
ssoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
131465400 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
131465400 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
131465400
NCBI-ProteinID:
XP_058494018
LinkDB
All DBs
Position
9:15094242..15109149
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEADLLGADTQGSEYDFTDFTLPSQTQTQGHTQSQVDSQVNG
PDDGLLNGGIEDSVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAPGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNTAGRPSNMYFQTHDQIGMIGAGPGHMA
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQKMRGNHGAGQGNGPNS
QASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagactctcaccttcttggacaccgaggaa
gcggacttgctcggagcagatacccagggctccgagtacgatttcactgatttcaccctg
ccaagtcaaacgcaaactcaaggccacacccaaagccaggtggacagccaggtaaacggt
cctgatgacggactcctcaacggtggaatagaggactctgttgctaaagccagccagctg
ttggccgagcttaactttgaggaggatgaagaagacacatactacaccaaagacctgcct
gttcacgcatgcagctactgtggtatccatgatccagcatgtgtggtgtactgcaatacc
agcaagaagtggttctgtaatggacgtggcaatacatctggcagccacattgtgaaccac
ttggtgagagccaaatgcaaagaggtgacactgcataaagacggcccgctgggcgagact
gtgcttgagtgttacaactgtggctgtcgaaatgtcttcctgcttggtttcatcccggcc
aaggctgattctgtggtggtgttactctgcaggcagccatgtgccagccagagtagctta
aaagacataaactgggacagctctcagtggcaaccactgatccaagatcgctgctttttg
tcctggctggttaagatcccgtcagaacaagagcagctacgagcccgtcagatcaccgct
caacagatcaacaagctggaggagctctggaaggacaatcccactgccaccttggaagac
ctggagaaaccgggcgtcgatgaggaacctcagcatgtgttgctgcgctacgaggatgcc
taccagtaccaaaatatctttggccctttggtcaaactggaggccgactacgacaagaag
cttaaggaatcccagacccaagacaatataacagtcaggtgggaccttgggttgaataaa
aagcggattgcctatttcacactgcccaagacggattcaggtgatatgcggctgatgcag
ggtgatgaaatctgcctccggtacaagggagatctggctccactgtggaaaggcattggc
catgtcatcaaagtccctgacaactatggggatgaaattgcaattgagctgagaagcagt
gtcggagcacctgtagaaatcccgcataacttccaggtggactttgtgtggaagtccact
tcctttgacaggatgcaaagtgccctgaagacatttgcagtggatgagacctctgtgtct
ggctacatttaccacaaactgctgggccacgaggtggaggatgtcaccatcaagtgccag
ctgcctaagcgattcactgccccgggcctgcccgacctcaatcactcacaggtgtatgct
gtaaagacagtgctgcagaggcctctcagtctgattcagggtcctcccggcactgggaag
actgtgacgtctgccaccattgtttaccacctgtcccgacagggaaatggccctgttctg
gtgtgtgctcccagtaacattgctgtggatcagttgactgagaagattgacaaaactggg
ctgaaggttgtcaggctgtgtgccaagagcagggaggccatcgagtcaccagtgtcattt
ttggcactgcacaaccagatcagcaacatggacagtatgccagagcttcagaaactgcag
cagctgaaggatgagactggtgagctgtcatctgctgatgagaaacgctacagggctttg
aaacgcactgctgagagggagctgctcatgaatgctgatgtgatctgttgcacctgtgtc
ggggctggagacccccgccttgccaagatgcagttccgctccatcctgatcgatgagagc
acccaggccaccgagccagagtgtatggtgcctgtggtgttgggagccaagcagctcatt
ttggttggtgaccactgccagctgggtcctgtggtgatgtgtaagaaggcagccaaggca
ggtctgtcccagtccctgtttgaacgcctggtggttctggggatccggccaattcgcctc
caggtccagtaccgtatgcacccagctctcagtgccttcccctccaacatcttctatgag
ggctccctgcagaatggtgtcaccgcagctgaccgcattaaaaaaggctttgacttccag
tggccacagccggacaagcccatgttcttctatgtgactcagggccaggaggaaattgcc
agctctggaacctcctacctcaacaggactgaggctgcaaacgtagagaagatcacaacc
aggctgttgaaggccggagccaaacccgaccaaatcggcatcatcaccccttatgagggt
cagcgctcttacctggtccaatacatgcagttcagtggctccctgcacaccaaactgtat
cagcaagtggaaattgccagtgtggatgccttccagggaagagagaaggacttcatcatc
ctgtcttgtgttcgtgccaatgagcatcagggcatcggcttcctgaacgaccctcgccgt
ctcaacgtggcgctgaccagagccaagtatggtgtgatcatcgtggggaaccccaaggcc
ctctctaagcaaccgctgtggaacaacctgctgaacaactacaaggagcagaaggtcctg
gtggaggggcccctcaacaacctgagggagagtcttatgcagttcagtaaaccacgcaag
ctggtcaacaccatcaaccctggaggacgcttcatgagcactgcaatgtatgatgcccgc
gaggccctcatccctggctctgcttatgaccgcagcaacactgctggacgtccatccaac
atgtactttcaaactcatgaccagatcgggatgattggggcgggccccggtcacatggct
gcgatgaatatccccatacccttcaacctggtgatgccaccaatgcctccacccagctac
ctgggtcagaccaacggccccgctgcaggtcgaggcgctatgaagggtaaacctggacgt
ggcggacggcagaagatgcgtggaaaccacggtgctggtcagggaaacggacccaacagc
caggccagccaggatggggcctcgcagtccttctcccagggaccattgacacaaggatac
atctccatgagccagccgtctcagatgagccagcccggcctctcacagccagagctctct
caggacagctaccttggcgatgagttcaagtctcaaattgacgtggctttgtcccaggac
tcaacttaccagggtgaacgtgcataccagcatggtggcgtgacgggactgtcacagtat
taa
DBGET
integrated database retrieval system
