Solea solea (common sole): 131467050
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Entry
131467050 CDS
T10853
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ssoe Solea solea (common sole)
Pathway
ssoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131467050 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssoe03019
]
131467050 (patl1)
Messenger RNA biogenesis [BR:
ssoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131467050 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
131467050 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
131467050
NCBI-ProteinID:
XP_058496740
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All DBs
Position
10:complement(28455030..28471430)
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AA seq
839 aa
AA seq
DB search
MLYNNSVSVVSLDDDCTLEEENEGQVEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAGLV
ENVGLGGGGGVMGRGSDLGGVEDITSTRLSASAGHHPLPSSLPSLNFSSSSVLPPQDVED
RGGGGGDLAESLARLILEADPAIAGVGATERPALSLSSTGSSISALHGLERPTVLPQLSS
IPHPTHSHQAHHPQHQLPPGPSTLGPPSGPPPSSAMLSYQQQQHLLHRGSAPIGQINSHS
IWESNMGFGPVSVTPVLATHMEDSPLMSIIKEVGLPKLPPHGRNDEGRDLSERVPPPRSS
SPVIGSPPVRAVPIGTPPKQPMSHSLNHQSHHPTAVHVRAPVQHRYPPPFPERLSPNTLL
NIANSPLCRSPFPPGVGPVLSQIKRAQLLSSQVAGFARGGPAPPLLPGGGFRPFFGGPPP
PHGHRMGPMGPMPPHCPPNHTPAIRHNTTHLHPQHRRMLTQRMQSRGGDRSRTGGDRRSR
DPYSNLMTLKEKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERERDSSKKEHTTK
LITPQVAKVEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKRDKQVWNKRR
QILYTVEKMYSLLLEVQDFEKRFVQAPEEDREALLEQHKTNTVQLCNSLREKEWDDRVSD
EQCVMIMSVRKGKRLISRLLPLLASPQSTAIVMAIARNLPALAKKDKQDQVLCWLVEPVS
TVIQSLSSSALTDLLQELQGSDGQLVTVLQNKFGVTLLYLILSEGEKMQSSDPNCQLMDD
NRWTELVFSVTRELLSVPSSSLSAPLFTPTNLLSLFSRYVDRQRLELLQNKLQITALSR
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgttgtacaataactccgtctctgtggtgtccctggatgatgactgtacgctggaggag
gaaaacgagggacaggtagaagaggaagatgaaatcgatcagttcaatgatgacacattt
ggagctggggccatcgatgacgactggcaggaggaacacaaacgcctcgctgggctcgtt
gagaatgttgggctaggaggaggaggaggagtgatgggaagaggatcagatttaggaggt
gtggaggacataacctccacccgtctctcagcgtctgcgggccatcatccccttccctct
tcccttccctcactcaatttctcgtcttcctctgtacttcctccacaagatgtagaggat
cgaggaggaggaggaggggacttggccgagtccctggccaggctcatcctggaagcagac
ccggccatcgctggcgttggagccactgagaggcccgctctgtccctgagctccacagga
tccagtatatctgctctgcatgggctggagcgacccacagttctgccccagctctcctcc
atccctcatccaactcactcacaccaggctcatcacccccagcaccagctgcctccagga
ccctccaccttaggccccccctctggccctcctccatcatcagcaatgctcagctatcaa
cagcagcagcacttgctgcacagagggtctgctcctattggccagattaactctcatagt
atttgggagagcaacatggggttcgggcccgtcagtgtcacccctgtactggctacacac
atggaggacagtccattaatgtctataatcaaagaggtgggtcttcctaaattacctcct
catgggcggaatgatgaagggcgggatttgtctgagagggttccacctccgcgctcttct
tcccctgtgattggctctcctccagtacgagctgtgcctattggtaccccgcccaagcag
ccaatgagccacagtctgaaccatcagagccaccatcccacagctgttcatgtgagagct
ccggtccagcacagatacccacctcctttccctgagcgtctttctccaaacaccctcctc
aatatagctaactccccgctgtgtcgcagtcccttccctcctggagtcggaccagttctg
tctcagattaaacgggcccagctgctcagctctcaggtggctggttttgcccgcggaggg
ccagcgccgccattgttaccaggtggtggtttccggcccttcttcggtggccctcctccc
ccgcacggtcaccgaatgggcccaatgggcccaatgccccctcattgtccccccaaccac
acaccagccatcaggcacaacaccacccaccttcaccctcagcatcgccgcatgctcacc
cagcgcatgcagagcagaggaggggatcgtagcaggactggaggggaccgtcgcagcagg
gacccctacagtaatcttatgaccctgaaagaaaaggagtgggtaaccaagatccagatg
atgcagctacaaagtacagacccttacctggatgactactactatcagaattactatgaa
aagatggagaaacgtcaggagagagaaagagacagcagcaagaaggaacacaccaccaaa
ctcatcaccccgcaggttgccaaggttgaacacacctacagaccagttcagtttgcaggc
tctttaggaaagttgacggtctctagtgtcaacaacccccgcaagatgatcgacgctgtg
gtgacgacgcgtacagacgatgaggagaaaagagacaagcaggtgtggaataagaggaga
cagattctctacactgtggagaagatgtacagtttgctgctggaggttcaagactttgag
aaacggtttgtccaagcaccagaagaggacagggaggcgctgctggagcagcacaagacc
aacacagtgcagctgtgcaactctctgcgggagaaggagtgggacgacagagtcagtgat
gagcagtgtgtgatgataatgtctgtgaggaagggcaagcggctcatatccaggctcctc
cccctcctggcctcaccacagtccaccgccattgtcatggcgattgcgcgcaaccttcct
gccctggccaagaaggacaagcaggatcaggtgctgtgctggttagtggagcctgtttcc
acggtgattcagtcactgtcgagctccgccctcacagacttgctgcaggagcttcaaggc
agcgacggacaactggtcacagtcctgcagaacaagtttggtgtgacactgctgtatctc
atcctgagtgaaggagagaagatgcaaagctcagaccccaactgtcaactgatggatgac
aatcgatggaccgagctggtgttttcagtcacgagggagttgctcagtgtcccgtcctcg
tccctctctgctcctctcttcactcccaccaacctgctctcgctcttctctcgttatgtg
gatcgtcagagactcgagctgttacagaacaagctacagatcactgctctgtccaggtag
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