Solea solea (common sole): 131468559
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Entry
131468559 CDS
T10853
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
ssoe Solea solea (common sole)
Pathway
ssoe04510
Focal adhesion
ssoe04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
131468559 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
131468559 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssoe00536
]
131468559 (col2a1a)
Glycosaminoglycan binding proteins [BR:
ssoe00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
131468559 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
131468559
NCBI-ProteinID:
XP_058498936
LinkDB
All DBs
Position
11:5048792..5070745
Genome browser
AA seq
1484 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSVVRCQEEDDQEAGDCIQDGQQYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPIIPSGECCPICPADASAHIESLGAKGQKGEPGEIADVVG
PKGPPGPMGPSGEQGPRGEAGAKGDMGNAGPRGRDGEPGTPGNPGPAGPPGPPGLGGNFA
AQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGGPGEAGEPGPAGPVG
PRGPSGPSGKPGSDGESGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGESGSSGENGAPGTMGPRGLPGERGRPGAAGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGAKGEAGPTGVRGAEGPQGPRGEGGTPGSPGPAGASGNPGTDGIPGAKG
SAGASGIAGAPGFPGPRGPPGPQGSTGPLGPKGQSGDPGIPGFKGEAGPKGELGAAGPQG
PPGPSGEEGKRGARGEPGTAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVSGAGG
PKGASGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPLGARGQPG
VMGFPGPKGANGEPGKPGEKGLVGRPGLRGLSGKDGETGAGGPHGPAGPAGERGEQGQPG
PSGFQGLPGPSGAPGENGKPGDQGVPGEGGVPGAVGARGERGFPGERGGAGPQGLQGPRG
LPGTAGTDGPKGAIGPAGALGSQGPPGLQGMPGERGAGGIPGPKGDRGDNGQKGLEGAPG
KDGSRGLTGPIGPPGPSGPNGAKGETGPGGPSGAPGSRGAPGDRGEVGPPGPAGFAGPPG
ADGQPGAKGELGEGGQKGEGGSPGPQGPSGAPGPVGPTGVSGLKGARGAQGAAGATGFPG
AAGRVGAPGPNGNPGPVGPSGPAGKDGPKGIRGDAGPPGRSGDPGLRGPSGQQGEKGEPG
PAGEPGKDGPFGPAGLGGSRGPVGLPGQRGERGFPGLPGPSGEPGKQGASGSGGDRGPPG
PVGPPGITGPAGDTGREGTSGSDGPPGRDGAAGVKGERGNTGPAGAPGAPGAPGVPGPLG
PLGKHGDRGEAGAQGPAGPSGPAGARGMAGPQGPRGDKGEAGEAGERGQKGHRGFTGLQG
LPGPPGPSGDSGTAGPAGPSGVKGPAGPTGPAGKDGSNGQPGPIGPPGPRGRSGESGPVG
PRGNDGPPGPPGPPGPGIDMSAFAGLGQTEKSSDPLRYMRADEASSSLRQHDVEVDSTLK
TLNSQIENLRSPDGSQKNPARSCRDLKLCHPEWRSGDYWVDPNLGSTADAIKVFCNMETG
ETCVYPSITKIPKKNWWTSQSKDRKHIWFGETMRGGFQFSYAREGPVASIQLTFLRLLST
EATQNFTYHCKNSIAYMDQTTGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDGCKKHTG
QWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4455 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactgttctgctacttgtagcatcccaggttgtttta
ctatccgtggtcagatgtcaggaagaggacgaccaggaggcaggtgactgcatccaggac
ggccagcagtataatgataaggatgtgtggaagccagagccgtgtcgcatctgtgtgtgt
gacagcggagcagttctgtgtgatgagataatctgcgaggagatcaaagagtgtgccaac
cctatcatcccatctggagaatgctgtcccatctgtcctgctgatgccagtgcgcacatt
gagtcacttggtgctaagggccagaaaggtgaaccaggagagattgccgatgttgtagga
ccaaaaggaccacctgggccaatgggcccatcaggtgagcagggaccacgtggagaagct
ggcgctaagggtgatatgggaaatgctggaccacgaggaagagatggtgagcctggcaca
cctggaaaccctggcccagctgggccacctggaccaccaggacttggagggaactttgct
gctcagatggctggaggttttgacgagaagtctggaggcgctcagatgggtgtgatgcag
ggaccaatgggtcctatgggtccccgtggtccccccggaccttctggagctcctggacca
cagggtttccaaggtggccctggagaggctggagagcctggtccagcaggaccagtggga
cctcgtggaccatctggaccttctggaaaaccaggaagtgatggggagtctggtaaacct
ggaaaagctggagagcgtggacctgcaggacctcagggagctcgtggattccctggaact
cctggacttcctggaattaaaggacatagaggtcaccctggtctggatggagctaaggga
gaaactggtgcagccggagccaagggtgagtctggttcctctggagagaatggtgcccct
ggaaccatgggcccacgtggtctgcctggtgagagaggacgtcctggagctgctggagct
gcaggtgcccgtggaaatgatggcttgcctggtcctgctggtccacctgggcctgttggt
cccgctggagcacctggtttcccaggatccccaggagccaagggagaggctggtcctact
ggtgtccgtggagctgagggcccgcagggaccacgcggagagggtggtaccccaggatct
cctggacccgctggagcatcgggaaaccctggtaccgatggtattcctggagctaaggga
tctgctggtgcttcaggtattgctggtgctcctggattccccggccctcgtggcccacca
ggaccacagggatcaacaggacctctggggccaaaggggcagtctggagaccctggtatt
cctggattcaagggtgaagctggacccaagggagagcttggcgccgctggtcctcaaggt
ccccctggcccttcaggtgaggaaggaaagagaggagccagaggagagccaggaactgct
ggaccacttggacctccaggagagagaggagctcctggtaatcgtggtttccctggtcag
gatggtcttgctggtgctaagggtgcccctggtgatcgtggtgtttctggagctggtggg
cctaaaggtgcttctggagacccaggacgcccaggagagtccggtcttcccggagccaga
ggtctcaccggtcgccccggagatgctggtcctcaaggcaaagttggaccctctggtgca
cctggtgaggacggtcgccctggcccacctggtcctctgggagcacgtggacaacccgga
gtgatgggattccctggaccaaagggagccaatggtgaaccaggaaagccaggagagaag
ggtcttgttggtcgtcctggactgagaggtctgtctggaaaagatggtgagactggtgct
ggtggaccccatggccctgctggacctgcaggagagagaggagaacaaggtcagcctggt
ccttctggcttccagggtctgcctggaccatctggtgccccaggagaaaatggaaaacct
ggagaccagggtgttcctggagagggtggagttcctggtgctgttggagctagaggtgaa
cgtggattccctggtgagagaggcggcgctggacctcagggacttcagggacctcgtgga
cttcctggaacagctggaactgatggacccaagggagccattggaccagctggcgctctt
ggatctcagggaccacccggtctgcagggtatgcctggagagagaggagctggtggaatc
ccaggaccaaagggagacagaggtgacaatggacagaaaggacttgagggtgctcctgga
aaggatggttctagaggtttgactggtcccattggtcctcctggcccatctggacccaac
ggtgccaagggagagactggacctggtggaccgtctggagctcctggttcccgcggtgct
cctggcgatcgtggtgaggttggtcctcctggacctgctggctttgctggacctcctggt
gcagatggtcagcctggtgcaaagggagagctcggtgagggcggacagaagggagagggt
ggttcccctggacctcagggaccatctggggctcctggacctgtgggacctactggtgtg
tctggacttaaaggagctcgtggtgctcagggagctgctggtgccactggattccctggt
gctgctggcagagttggagctcctggtcctaatggtaatcctggccctgttggtccctct
ggtcctgctggtaaagacggaccaaagggtattcgtggtgatgctggccccccaggaaga
tcaggagatcctgggcttcgtggaccttctggtcaacaaggagagaagggagagcctgga
ccggctggagaacctggtaaagatggaccttttggacctgctggtctgggtggttcccgt
ggtcctgtaggtttgcccggtcagcgtggagagagaggattccctggtctccctggacct
tctggagagcctggtaaacagggagcttcaggttctggtggtgatcgtggacctcctgga
ccagtgggaccccctggaattactggacctgctggagatactggtagagagggaacttct
ggttcagatggacctcctggtcgggacggagctgctggtgtcaagggagagcgaggtaac
accggtcctgctggtgcccctggagctcctggtgcccccggtgtccctggacctcttgga
ccccttggaaagcacggagacagaggagaagctggtgctcaaggacctgcaggaccttct
ggacccgctggtgcaagaggaatggctggaccccaaggaccacgtggagacaagggagag
gctggtgaggctggagagagaggacaaaagggtcaccgtgggttcactggtctgcagggt
cttcctggaccccctggtccatctggagattctggaactgctggacctgcaggaccaagc
ggtgttaagggaccagctggaccaactggacctgctggcaaagatggatctaatggacaa
cctggcccaattggacctcctggaccccgtggacgctctggagaatctggtcctgttggt
cctcgaggtaacgatggaccccctggtccccctggtccccctggccctggcattgacatg
tctgcctttgctggtctgggtcagacagaaaagtcctccgatcctctcaggtacatgagg
gccgatgaggcctccagctccctgaggcagcacgacgttgaggttgactcaacactcaaa
accctaaacagccagattgagaacctgcgcagccctgacggctcccagaagaaccctgct
cgctcctgcagagacctgaaactatgccaccctgaatggaggagcggtgactactgggtt
gatcccaaccttggcagcacagctgatgccatcaaggtattctgcaacatggagactgga
gagacctgcgtctacccaagcatcactaagatccccaagaagaactggtggaccagccag
agcaaggaccgcaaacacatctggttcggagagaccatgcgtggaggattccaattcagc
tatgcccgggaaggcccagttgccagcatccagctgacattcttgaggcttctatccact
gaggcaacccagaatttcacttaccactgcaagaacagcattgcctacatggaccagacc
acaggcaacctgaagaaggctttgcttttgcagggatccaatgatgtggagatccgtgca
gagggcaacagtcgcttcacatacagcgtgttggaggatggctgcaagaaacatacaggc
cagtggggcaagaccgtctttgagtacaaaacacagaagacctcccgtctgcccatcgtg
gacattgctcctatggacatcggaggagcagatcaggagtttggagtggatgtaggcgcc
gtctgcttcttgtaa
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