Solea solea (common sole): 131468880
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Entry
131468880 CDS
T10853
Symbol
pan2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
ssoe Solea solea (common sole)
Pathway
ssoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131468880 (pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssoe03019
]
131468880 (pan2)
Enzymes [BR:
ssoe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
131468880 (pan2)
Messenger RNA biogenesis [BR:
ssoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131468880 (pan2)
mRNA degradation factors
3'-5' decay
Pan complex
131468880 (pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
Beta-prop_THOC3
WD40_like
Motif
Other DBs
NCBI-GeneID:
131468880
NCBI-ProteinID:
XP_058499545
LinkDB
All DBs
Position
11:5336675..5349111
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AA seq
1208 aa
AA seq
DB search
MMNFDGLDAGMGDYPPSLHGTLESSMEPSMDPHLNPSLLQGVELDPDGLTVTVPESVHLM
EGMFSELHSAVSEVGIPVTATHFDVQEEMLWMGNHRGHATSFFGPTMGRFSSFQVHGTDD
IRQIQSLETGVLFLSKCNLKCYTRGGLVMFDYPMDEGADMHSLLVTDNNTLVMGGLQNYV
SEVDLNTVQETQKFTVELPGVAIMRQTSRFFFCGHTSGKITLRDLRTFKMEQEFDAFSGS
LSDFDVHGNLLAACGFSSRGLNGLACDRFLMVYDLRMMRAVTPLQVHVDPLFLRFIPTYT
SRLAIISQTGQCQFCEPTGLANMADLFHVNTVGQLLMSFDVSSSKQALAFGDSGGCVHLW
SDAPEVSFNDYSRETDFPLPCLVETLPQLDWNHDLLPLSLLPTPLTSTEPLLSDWSSVMS
TPSPRRAPPVDPEILRTMKTVGFIGYAANPRTRPRNQVPYKIKDVELDYDNYNQVPESPI
GRDEEPHLYMVPKKYRKVTIKYSKLGLEDFDFKHYNRTLFAGLEPHIPNAYCNCMIQVLY
FLEPIRCLVQNHLCQKEFCLACELGFLFHMLDLSRGDPCQASNFLRAFRTIPEASALGLI
LADSDEQTGKARLGRLIQSWNRFILTQLHQETQEQEGPQAYRGASSSSLGSSGESAIGKL
FGCEVENSSLCRCGKETVRSSLTLLFNMHYPEQNSQEKTIKEYEFAEILKKSICLEQSTQ
AWCENCEKYQPTVQTRNIRCLPDVLVINCEVNSVKEAEFWKVQVEYAVNKALQKEANEPA
KPKEPPPMPTEWCLDGEDFCSMEGFDPRAEDLRNVWIPLALKMSISKSQGLEISSWPEGE
ELSADEEAEGAALYDLVVTVSHIQDTRTGGNLVAHIKVGETYHQRKEGVTHQQWYLFNDF
LIEPVDKAEAAQIDVSWKVPAILYYSRRNYHTKYDLRIKNPIDASVLLTEASLARKQRKS
HATFIPLMVSEMPQAGDMVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCVRGQ
GPNEGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDTG
VRFVGHGLQKDFRVINLLVLKDQVIDTVHLFHLPRKRMISLRFLAWYFLDLNIQGETHDS
IEDARTALQLYRKYLELSRGGGNDEVRKVLKGLYEKGRQQDWKVPDADTGDGQGSPKSAA
VFPSVMGL
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgatgaactttgacggtcttgatgctgggatgggtgattaccctcccagtcttcatggg
acgctggagtcgagtatggagccttccatggatccacaccttaaccccagcctcctgcag
ggtgtggagcttgatccagacggattgaccgtgacagtccctgagtcagtgcatctcatg
gaggggatgttttctgagcttcacagtgccgtttcagaagttggcatcccagtcactgca
acacattttgatgtacaggaggaaatgctgtggatgggaaaccacaggggccatgcaact
tcgttctttgggccaacaatgggcaggttctcgtctttccaagtgcatggaacagacgac
atccgacagattcagagtttggaaacaggtgtgctgttcctctctaagtgcaacctcaaa
tgctacacacgtggaggccttgtcatgttcgattatccgatggatgaaggagctgatatg
catagtctccttgtgactgacaacaacacattggtcatgggaggacttcaaaactatgtg
tctgaggttgacttgaatactgttcaagaaactcaaaagttcactgttgaattaccagga
gtggcaataatgcgtcaaaccagccgtttcttcttctgcggacacacgtctggaaagata
accctcagggatttgcgcactttcaaaatggagcaggagtttgatgcattctctggcagc
ctctcagactttgacgttcatggaaatcttttggctgcatgcggattctccagtcgggga
ctgaatgggttggcatgcgaccgttttctcatggtgtatgacctccgtatgatgcgagcc
gtgactccacttcaggtgcacgtggaccccctcttcttgcgcttcattcctacctacaca
tcacgcctggcaattatctcacagacaggccagtgccagttctgtgaacccactggtctc
gccaatatggcagacctttttcacgtcaacactgtgggccagttgctcatgagttttgac
gtttcatccagcaagcaagcattggcctttggggactctggggggtgtgtgcatctgtgg
tccgacgctcctgaagtttcattcaatgattattcccgggagacagacttccctctgcct
tgccttgtggaaacactgcctcagctcgattggaaccacgacctgctgcccctctcactc
ttacccacgccactgaccagcactgagccactgctgtcagactggtcctctgtcatgtct
acacctagtcccagacgagctcctcctgtggacccagaaatcctgcgcacaatgaaaact
gttggcttcatcggttacgcggccaatcctcgcacccgccctcgcaaccaggttccttat
aaaattaaagatgtggagctggattatgataattacaatcaagtccctgaatcaccaatc
ggacgtgatgaggagccacatctctacatggtgcccaaaaagtatagaaaggtcacaatc
aaatactccaaacttggacttgaggactttgacttcaaacattacaacagaaccttgttc
gctggtctggaacctcacatccccaacgcttactgtaactgcatgatccaggtgttatat
ttcctggagccaatccggtgtctagtgcagaaccatttgtgccagaaagagttctgtttg
gcctgtgagctcggtttcctcttccacatgttggatttgtcacgaggagatccatgccag
gccagtaacttcctccgagcatttcgcaccattcctgaagcgtcggcactaggcctgatc
ctcgctgactcggacgagcaaacgggcaaagccagacttggtcgtttgatccaaagctgg
aaccgattcatcctcacccagctccaccaggagactcaggagcaagaaggaccgcaggcc
tacagaggagccagcagcagttctctgggctcctctggtgagtctgccattggaaaactg
tttgggtgtgaagtggagaacagcagcctgtgtcgctgtggcaaggagacggtccgttct
tccctcacgttgctcttcaacatgcattaccctgaacaaaactcccaggaaaaaactata
aaggagtatgaatttgctgagatcctgaagaagagcatttgcctggagcagagcactcag
gcctggtgtgaaaactgtgaaaagtatcagcccacagtgcaaacacgtaacattcgatgt
ctaccagatgttctggttataaactgtgaggtgaacagtgtgaaagaggctgagttctgg
aaggtgcaggtggagtatgccgtcaataaggccctgcagaaagaggcgaacgaacctgca
aaacccaaggaacccccaccgatgcctactgagtggtgtttggatggtgaggacttctgc
agtatggagggcttcgaccctcgggccgaggatttgcgtaatgtctggattcctctcgcc
ctcaagatgtccatcagcaaaagtcaggggctggagatcagcagctggcccgagggagaa
gagttaagtgctgatgaggaggcggagggtgctgctctgtatgacttagtggtgactgtg
tcccacatccaggacactcgcacgggtggaaacttggtcgcccacattaaagtgggagag
acttaccatcaaaggaaagagggagtcacacaccagcagtggtacctctttaatgatttc
ttaattgagccagttgacaaggctgaagctgcacaaattgatgtgagctggaaagtgcca
gccattctctattattccaggaggaattaccataccaaatacgacctccgcattaaaaat
cccatcgacgccagcgtgctgctgactgaagcttcactggcgcgaaagcagaggaagagt
cacgccactttcatccccctcatggtcagtgagatgccgcaggctggagacatggtggga
ctggacgccgagtttgtcacactcaatcaggaagaggcggaactgcgcagtgacggcacc
aagtcgaccatcaagcccagtcagatgtcagtggccaggatcacttgtgtgagaggtcag
ggccccaacgagggggttcccttcatcgacgattacatctctactcaggaacaagtcgtc
gactacctcactcaatattctggaatcaaacccggagacctggatgcaaagatttcctca
aagcacttgaccactctgaagtccacctacctaaagctgcgcttcctcatcgacacgggt
gttcgctttgtcggtcatggcttacagaaggactttcgggtcattaatttattggttctc
aaagaccaagtcatcgacaccgtccacctgttccatttgcctcgcaaaaggatgatttct
ctccgattcctggcctggtactttttagacctgaacatacagggggaaacccacgacagc
atagaggatgcacgcaccgccctgcagctgtacaggaagtacctggagctgagccgtgga
ggcgggaacgatgaagtcaggaaggtgctgaagggactctatgaaaaaggtcgtcagcag
gactggaaagtcccagacgcagacacaggagatggtcaaggtagcccaaaaagtgctgct
gtgtttccctctgtgatggggctgtga
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