Solea solea (common sole): 131471065
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Entry
131471065 CDS
T10853
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ssoe Solea solea (common sole)
Pathway
ssoe03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
131471065 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssoe03021
]
131471065 (smarcc1a)
03036 Chromosome and associated proteins [BR:
ssoe03036
]
131471065 (smarcc1a)
Transcription machinery [BR:
ssoe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
131471065 (smarcc1a)
Chromosome and associated proteins [BR:
ssoe03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
131471065 (smarcc1a)
PBAF complex
131471065 (smarcc1a)
GBAF(ncBAF) complex
131471065 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
BRCT_2
BRCT
SpeFL
Motif
Other DBs
NCBI-GeneID:
131471065
NCBI-ProteinID:
XP_058503285
LinkDB
All DBs
Position
13:complement(24070940..24091484)
Genome browser
AA seq
1137 aa
AA seq
DB search
MATAATTAGGTGTGGPAGGPVGGGGAAVGRKKDGGPSTKFWESSETISQLETVRLWIGKH
YKKYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFHDFKAGGSLCHIL
GSVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSPDIEQKQAS
KLKDIIKRHQGSMTDDKSKATHHIYPSPSQQEEEEWLRPVMRKDKQVLVHWGLYPDSYDT
WVSASEVDGDIEDPPSNDRPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKLVNFRQRIFP
KEEESSRTPDRKERKANSAGKKRRRSPSPPSTPVESRKKGGKKGNPGSHWKRRGHRGEEE
DTEEDITKDMDDSSAGASMEEGSVPKNAGSKKDIENTPVKGGNVADLDDMEDDSVLSGGK
DDDDQGKADINRLMDTSEDNVTEQTHHIIIPSYSSWFDYNCIHEIERRALPEFFNGKNKS
KTPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDS
ESRPLPMGPPPTPHFTVLADTPSGLVPLNHRPPPIPPPQQMPNFADKIKDKAIDLQNFGL
RSDLYKKIPKGKSINSTRDWTEQETLLLLEALEMFKDDWNKVSEHVGSRTQDECILHFLR
LPIEDPYLENSEATLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAARAALEEFS
RVREEVPAELVEAHVKKVQEAARSTGKVDPSFGLESSGIAGTAPDEPEKTESTEPEKIET
DTDSQQADKAELKEEAEKPSESAEKNDKTEAVDKVKKEGGETSEREEEPEEGGEAKTAPA
DKDEEAMETSSSEQEKDKEDKAATDEVEEKRKKLEHDIGEGNIATAAAAALASAATKAKH
LAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFH
MEQLKYAEMKARQQMEQQAAAAAAAAAAAQAQGQGQGHAPGSGPHSGPPQPGMHPGGPPP
HHGGPPPHHGAPPPHHGGPPPGAAMHPGFPTIGHHPMAPHHPGQTGPMGPSQPVPGRMLS
GPPSAGPPPGGMPPMMPPRHPGAPNGMYPGPAPPQPEGIPPVPVGPPAPPSARVADN
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgaccacggcaggcgggacgggaaccggtggaccggccggcggcccg
gtcggtggcggaggagcagcggtgggacgtaaaaaggacggtggcccgtccacgaaattc
tgggaaagttcagagacgatatcccaactggagacggtgcgactgtggatcggaaagcac
tacaagaagtatgtccagaatgactccccctccagtaaaagcttggcgggcctggtcgtc
cagttgcttcagttccaggaggacgcatttggacgcagggtcaacaatcctgctcttacc
aaactacctgccaagtgtttccacgatttcaaagcaggaggttctctctgtcacatcttg
gggtcggtctacaaatttaagagtgaacagggctggcggagatttgacctgcagaatcct
tccaggatggacaggaatgtggaaatgttcttaaatgttgagaagaacttggtccagaat
aactgcctgactcgacccaccgtcttcctgtcaccggacatcgagcagaaacaggccagt
aaactcaaagacatcatcaaaaggcaccagggctccatgactgatgataaatcaaaagcc
acccaccacatttacccgtcaccatcccaacaagaagaggaggagtggcttcgtcctgta
atgaggaaagacaagcaggtgctggtgcactggggtctttacccagacagctatgacacc
tgggtatcagccagtgaggtggatggcgacatagaggatccacccagcaacgacagaccc
tggaaggtccatgccaagtgggttttagacacggatgccttcaatgagtggatgaatgaa
gaagactacgaggtcgatgaaaacaagaaactagtcaacttccgtcagaggatcttcccc
aaagaggaggagtcttcccgtacacccgatcgtaaggagcgcaaagccaactccgccggc
aagaagaggagacgctcgccctcgccgcccagtactcctgtcgagtctcgcaagaaggga
ggaaagaaagggaaccccgggtctcactggaagcgacggggccacagaggagaagaggag
gacacggaggaggacataaccaaggacatggacgactcatcagccggtgccagcatggag
gagggaagcgtgcccaaaaacgcaggttcaaagaaggacattgaaaacactccagtaaaa
ggagggaatgtggcggacctggatgacatggaggatgactctgtgctgtctggtggaaag
gatgacgacgaccagggcaaggcggatatcaaccgactgatggacactagcgaggacaac
gttactgaacagactcatcacatcatcatccccagctactcttcttggtttgactacaac
tgcatccacgagattgagagaagagccttgcctgagttcttcaatggaaagaacaagtcc
aaaaccccagagatatacttggcctaccgtaacttcatgatcgacacgtatcggctgaac
cctcaggagtatctcacctccacctcctgccgcaggaacttgaccggggatgtgtgcgcc
atcatgagggttcatgccttcttggagcagtggggtttggtaaattaccaggtggactct
gagagtcgcccactgcccatgggccccccaccaacaccccactttactgtgctggctgat
acaccctctggccttgtgcccttgaaccacagacccccaccaattcctcctccacagcag
atgcccaactttgcagacaaaatcaaagacaaagccatcgacttacagaactttggactt
cgctctgacctttacaagaaaatccctaagggtaaaagtatcaactccaccagggactgg
actgagcaggagactctgctgctgctagaggccctggagatgttcaaagatgactggaac
aaagtgtcggagcatgttggttcacgcacccaggacgagtgtattctgcacttcctgcgg
ctgcccatcgaggatccatacctggagaacagtgaggccaccctgggccccctggcctac
cagcccatacctttcagccagtctggaaaccctgtcatgagcacagtagccttcctggcc
tctgtggttgaccccagagtggcatctgctgctgccagggcagccttagaggagttctcc
cgtgtgcgtgaggaggttccggctgagctggtggaggctcatgtgaagaaggtgcaggag
gctgccaggagcacagggaaggtcgacccctccttcggcctggagagcagtggcatcgcc
ggcactgcccctgatgagcccgaaaagactgaatcaacagaaccagaaaaaattgaaact
gacaccgactcccaacaagccgataaggcggagttgaaggaggaggcagagaagcccagt
gagtctgcagaaaagaacgacaagacagaagccgtagacaaggtgaagaaggagggaggt
gagacgtcggagcgtgaggaggagccagaggaaggaggggaggccaagaccgcaccagca
gacaaagacgaggaggctatggagacatcgtcctcagagcaggagaaggacaaggaggac
aaggcggctacagatgaggtagaggagaagaggaagaagctggagcatgacatcggagaa
ggaaacatcgctacagcggccgcagctgcgctggcatctgctgccaccaaggccaagcac
ttggcagcagtagaggagaggaagatcaagtccctggtggctctgctggtggagacccag
atgaagaagctggagatcaaactgaggcacttcgaggaactggaaaccatcatggaccga
gaaaaagaggctctggagcttcagcggcagcagctgctcaccgagcgtcaggcgttccac
atggagcagctcaaatatgcggagatgaaggcaaggcagcagatggagcagcaggcagct
gctgctgctgccgccgctgcggcagcccaggcccaaggacagggacagggacacgcccct
ggatctggaccacactccggacccccacaaccaggcatgcatcctggaggaccgccacca
caccacggaggacctccaccacatcatggagcacctccaccccaccacggagggccgcca
cctggggctgccatgcaccccggcttccccacgattggtcaccaccccatggccccccac
cacccaggacagacaggaccgatgggaccgagccagccggttccgggacgtatgctgtct
ggccccccctctgcaggcccacctcccggcggcatgccacctatgatgcccccacgccac
cctggagctcccaacggcatgtaccctggaccagcacctccacagcctgaagggattcct
cccgtccctgtgggtcctccagcgcccccaagtgcacgagtggctgacaactaa
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integrated database retrieval system
