Solea solea (common sole): 131471196
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Entry
131471196 CDS
T10853
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ssoe Solea solea (common sole)
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssoe03000
]
131471196 (rc3h1b)
04121 Ubiquitin system [BR:
ssoe04121
]
131471196 (rc3h1b)
Transcription factors [BR:
ssoe03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
131471196 (rc3h1b)
Ubiquitin system [BR:
ssoe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
131471196 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
zf-CCCH_UNK
Prok-RING_4
zf_CCCH_4
FYVE
NYN_YacP
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
131471196
NCBI-ProteinID:
XP_058503572
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Position
1:complement(11905867..11921791)
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AA seq
1135 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAINTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGQGGLMPDDGLPLDVAVTRKPS
PLPNGSVAPSLPQLIARGTDTVPYELLRKPVKMDGVNSSAPGSPPDVLDSVPKPGMSLPP
HSLGHSRMPTDHLSGVKHMPGVPRSSPVYSQQQLPEMCYDSRPPPSASQYEPPQYPTGYP
YQPPPQYVSRDYMRNPPPPSDSGPPYQDPYSGYGPPERSYQAPHSGPSFSYPHPPHYDRG
RHGTYSGPPPPPQPYPSQRDNLVRMSPAPLDVPPPSGGQANSLYHQEPSARDRYPPDSYY
PPGAQAPPMRAYVSRGPSYSGQQPSLDYLHRRRQELLSQLEERKVISPPPFAASPTLSHS
FPSDYPEYGDENSKTILKGREPDYTGQYSPWSCETIGSYIGTKDAKPKDVMVSGTMEMMN
VEAKSLREPSLEAPRRSAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTAGPVQAMVT
TSQNTNSKHMAMPAAEYTYGSHGGWGGAAYPSHQTATSSQGHFSERLPLADREQLKIELQ
QVNQQINQQTQMHSMEAASNSLMLQREANALAGQSVQPCQAQAAVVAQQQQPKWPTGGAG
ATPVSSEQLSLELHQVEREIGKRTREMAMENQVAHDVQQYKMKPTENGQPDHKSQLEEIS
LALGEVSNGSSSLQESAVGGSMLSLTNKTSALSLCSDPGATGSEMQKNGVVHSCS
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacggagttcctgctgtgtccaatctgcacacagaca
tttgaagagactgttcgcaggcccatcagtttaggttgtggacatactgtctgcaagatg
tgcctgaacaagttgcaccgcaaggcctgtccctttgaccagacagccatcaacacagac
attgagcagctacctgtcaacacagccctgttgcagctggtgggaggccaggttcctaag
gctcaaccagttgccttgattaccagtccagaagactcacagcattatgaggaggccagg
cagtgtgtggaggagctggccctctacctcaaacccctcagcaacacccgaggtgtgggt
ctgagcagcacagcccagagcatgctgagtcgacccatgcagaggaaactggttacctta
gtccactgccagctggtggaggaggagggccgagttagagccatgagagctgcccgctct
cttggtgagcgaactgttaccgagctcatcttgcagcaccagaatccacagcaactttcc
tccaatctgtgggctgctgttcgtgcacggggatgtcagtttcttggcccagcaatgcaa
gaggaagctctaaagttggttctccttgctctggaggatggttctgctctgtctaggaag
gtgttggttctctttgtagtccagaggcttgagccacgtttcccacaggcctctaaaact
agtataggtcatgtggtgcagctgctctacagagcttcctgcttcaaggtaaccaagcgc
gatgaagattcatccctgatgcagctgaaagaggagtttcgcacttatgaggctctgcgg
cgtgagcacgactctcagattgttcagatcgccatggagggagggctgcgcattgcacct
gaccagtggtcttctctgttgtatggagatcagtctcacaagtcacacatgcagtctatt
atagataagctgcagaccccagcatctttcgctcagagtgtccaggagctgacgattgca
ctgcagaggaccggcgacccagctaacctcaacagactgcgaccccacctggaactactg
gccaacattgatcccagtcctgatgccccccctcctacatgggagcagcttgagaagggc
ttggttgcagtgaagacagtggtgcacggcttggtggacttcatccagaaccacagcaag
aaaggagctgatcctcaacagcctcctcagcacagcaagtacaagacatacatgtgccgc
gatatgaagcagaaaggaggctgtcctcgtggagccagctgtacctttgctcactctcag
gaagaactggagaagtatcgtaagatgaacaagcgtctggcagctcgcctccccggccaa
ggaggtctcatgccagatgatggccttcctcttgatgtggctgtgacccggaagccttca
cccctccccaatggcagtgttgcgccctctttgccccaactcattgctcgtggcactgac
acggtcccatatgagctgttgcgtaaacctgttaagatggatggagtgaattccagtgcc
cccggatcaccacctgatgttctggactctgtgccgaaacctggtatgtcactgccacct
cattctctgggccacagcaggatgccaactgaccacctgtctggtgtgaagcacatgcct
ggggtacctagaagttctcctgtgtactcacagcaacagctccctgagatgtgctatgac
agtcgcccaccaccttctgcttctcagtatgagccaccgcaataccccacaggttatccc
taccaaccaccaccacagtatgtttctcgggattacatgcgtaatcctcctcccccaagt
gattcaggacccccctaccaagatccctactctggttatggccccccagagcgctcatac
caggcccctcactctggcccatccttctcttacccccatcctcctcactacgaccggggt
cgccatgggacctacagcggtccaccgcctcctccacagccttacccatctcagagggac
aacctggtcagaatgagtcctgcaccattagatgttcctccaccatcaggtggtcaggca
aactcactgtaccaccaggagcccagtgctagagatagatacccaccagacagctactat
ccaccaggtgcccaggctccacccatgagggcttatgtcagcagggggccatcatatagt
ggtcaacaacccagcctggactacctacaccgacgtcggcaggagcttttgtcccagctt
gaggaaaggaaggtcatctcccctccaccattcgctgcctctcccactctttcccattcc
ttccccagtgactaccctgagtatggtgatgaaaactccaaaaccattttgaaaggcaga
gagcccgactatacggggcaatactcaccctggtcttgtgagaccattggctcctacatt
ggcacaaaggatgccaaacccaaagatgttatggtttctggtaccatggaaatgatgaac
gtggaggcaaagagtctgagggaaccgtcactggaggctcctcggaggagtgcagaagtg
aaggatgatgaccccattatcccatttggcccacagcccactgtatcacgtttcggtgcc
atctcccgcacctcaaagacaggatatcagaccgctggccctgtgcaggcaatggtcacc
acttctcagaacacaaactctaaacacatggccatgccagcagcagaatatacgtatgga
agccatggaggatggggtggagctgcatacccctcccaccagactgccacctcctctcag
ggacacttcagtgagcgcctccccctggcagacagagaacagttgaaaattgagctgcag
caggtcaaccagcagatcaaccaacagacccagatgcacagcatggaggctgccagtaat
tctttaatgctgcagagggaggccaatgcattggcaggtcagtctgtgcagccctgccag
gcccaggctgcagtagtagctcagcagcaacaacccaagtggccaacagggggagcaggt
gctactcccgtctccagtgaacagctaagccttgagctccaccaggtggagagagagatt
ggaaaaaggacccgtgaaatggctatggaaaaccaagtagcacatgatgttcagcagtac
aagatgaaacctacagagaatggacaaccggaccacaagagtcagctggaagaaatctcc
ctggctcttggcgaggtgtcaaatggctccagcagtctgcaagaaagtgcagtaggcggg
tccatgctgtcactgaccaataagacgtctgcattgagtctgtgctccgatccaggtgcc
actggttcggagatgcagaagaatggcgttgtccattcctgctcttag
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