Solea solea (common sole): 131472303
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Entry
131472303 CDS
T10853
Symbol
cnot6a
Name
(RefSeq) CCR4-NOT transcription complex subunit 6a
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
ssoe Solea solea (common sole)
Pathway
ssoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131472303 (cnot6a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssoe03019
]
131472303 (cnot6a)
Enzymes [BR:
ssoe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
131472303 (cnot6a)
Messenger RNA biogenesis [BR:
ssoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131472303 (cnot6a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
131472303 (cnot6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
131472303
NCBI-ProteinID:
XP_058505309
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Position
14:complement(15297404..15312765)
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AA seq
559 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSTEEAANGKKSYWAELEISGRVRSLSTALWSLTHLTALHLSD
NSLSRIPPDIAKLHNLVYLDLSSNKIRSLPSELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEIMSLYQEPDGTRRLLNYLLDNLAGAIKRLPTEQPPARSWISLQEP
DRSRGSALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEIMGCNADVMSLQE
VETEQYYNFFLPELKEQGYEGFFSPKSRARTMSESDRKHVDGCAIFYRTEKFSVVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEVRKEMMELSSGKSLHGMEKQLLLVANA
HMHWDPEYSDVKLVQTMMFLSEVKSIVDKATRSLKLSSVSGETNAIPLVLCADLNSLPDS
GVVEYLSTGGVDCTHKDFKELRYSDCLTKFNCNGKNSTANGRITHGFKLKTAYENGLMPY
TNYTFDFKGVIDYIFYSKPNLNVLGILGPLDPHWLVENNVSGCPHPHIPSDHFSLFAQLE
LLLPNLPSQVNGLHLPARR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgacccgccggatcccaggcggatgtatacaatcatgtctacc
gaggaagcagccaacgggaagaagtcatactgggctgagctggaaatcagtggccgtgta
aggagtctcagcacagccctatggtctctcacccacctcactgccctgcatctaagtgac
aattcattgtcacgcatcccaccagacattgccaaattacacaacttggtgtacctggat
ctgtcatccaataagatcaggagtctgccgtcagagcttggcaacatggtgtctctcagg
gaactgcttttaaataacaaccagttgcgggttctgccatttgaattggggaaactgttt
cagttacaaacactggggttgaaaggaaacccacttgcacaagaaattatgagcctctac
caggaacccgatggcacgcggagactgctcaattacttgttagacaatctggcaggggcc
atcaaacgcttaccaacagagcaacccccagctcgctcatggatctcactccaggaacca
gatcgttcacggggctcagcactgttctctgtgatgtgctacaatgtgctgtgtgataag
tacgccacacgacaactgtatggttactgtccctcctgggctctaaactgggaatacagg
aagaaatcaatcatgcaggagattatgggctgcaatgcggacgtcatgagtttacaggaa
gttgagaccgagcagtactacaatttcttcttgcctgagctgaaggagcagggatatgag
gggttcttcagtccaaagtcacgagctaggacgatgtctgagtcggatcgtaaacacgta
gatggatgtgcaattttctacaggacggaaaagttcagtgtagtacagaaacacacagtg
gagtttaaccagctggccatggctaactccgagggctcagaggctatgctgaacagggtg
atgaccaaggacaacatcggagtagctgtactgcttgaggtccgcaaagagatgatggag
ctctcctctggaaagtcactccacggcatggagaagcagctccttctggtagccaatgcc
cacatgcactgggacccagagtactctgatgtaaagctcgtccagaccatgatgttcctg
tcggaagtgaagagcatagtggacaaggctacacgcagcctaaagttgtcctctgtgtct
ggtgaaactaatgccattccactggtgctgtgcgctgacctcaactctctgcctgactct
ggcgtagtggagtacctgagtactggcggagtggactgcacccacaaagacttcaaggag
ctacgttacagcgactgcctgaccaaatttaactgcaacggcaagaacagcacggccaac
ggcaggatcacccatggcttcaagctgaagaccgcttacgagaacggcctgatgccttac
accaactacacctttgacttcaagggcgtcattgactatattttctactccaagcctaac
ctgaacgtgctgggtatcttaggcccactggacccacactggctcgtagagaacaatgtc
agcggctgcccacatccccacatcccctccgaccacttctccctctttgctcagctggag
ctgctcctgcccaacttgccctcccaggtcaacgggctccatttgcctgctcgcaggtag
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