Solea solea (common sole): 131472797
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Entry
131472797 CDS
T10853
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
ssoe Solea solea (common sole)
Pathway
ssoe03008
Ribosome biogenesis in eukaryotes
ssoe03013
Nucleocytoplasmic transport
ssoe03015
mRNA surveillance pathway
ssoe05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131472797 (nxf1a)
03015 mRNA surveillance pathway
131472797 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
131472797 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
131472797 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssoe03019
]
131472797 (nxf1a)
03009 Ribosome biogenesis [BR:
ssoe03009
]
131472797 (nxf1a)
Messenger RNA biogenesis [BR:
ssoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
131472797 (nxf1a)
mRNA cycle factors
Stress granule specific factors
131472797 (nxf1a)
Ribosome biogenesis [BR:
ssoe03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
131472797 (nxf1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
LRR_8
UBA_8
LRR_9
RRM_NXF1-2
DUF8346
Motif
Other DBs
NCBI-GeneID:
131472797
NCBI-ProteinID:
XP_058506233
LinkDB
All DBs
Position
14:18739554..18750159
Genome browser
AA seq
666 aa
AA seq
DB search
MDRRGIWFQRCFRNLVVTRKVNDDQGDFMARRDVRSTDIMVPREHDDRTGPQFRNRKGRS
YNRGGMHDRTRRDRQRGGHSSDFGGPGPRSRLDDNDGDVTMSDSNTQDGSQYRSHPYRPP
HRKGDVRFRDRRPGKGGGGRGGGGFRDRGGGGGSGGGGKNQSGWSKVTIPHGRKYDKKWL
LTALQNICSVTFTPVQFHVDHDRAHFYLDDAPAAIALRKCSHKITDSDGYKVEVHVNPHA
PPAFLASDLKSEHLEHLKQCMGKRFDASQQSLDLNNIRTDPDLVSQKIEVTLNRKTHMEA
VISVIAGHIPELACLNLSNNRIHKLEELAELVTKVPNLKVLNLSHNELKSDRELDKLKGL
KLVELWLNRNPLCSYFKDQALYISAVRQRFPRLLKLDGQDLPPPIGFDVETPTTIPPCKG
SCFGSEEIKAPILGFLQQYYSIYDSGDRQPLLDAYHDGASLSLTTPYSTQNPSRSSLGEY
HKDTRNLKRIKDTTMRFRLLKHTRLNVVAFLNELPKTQHDIASFTIDVNTCTNTLLSFTV
SGVFKEVAVDGKSRDSTMAFSRVFVTVPAGGSGLCIVNDQIFIRMATTEEIRRAFVAPAP
TPSSSPVPTLTAPQQEMLTAFSQKSGMNLEWSQKCLQDNEWDFNRAAQIFTQLKTEGQIP
DVAFIK
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatagacgcgggatttggttccagagatgcttccgcaacctggtggtgacacgtaag
gtgaatgacgaccaaggagattttatggcgagaagagatgtcagaagcactgatatcatg
gtcccacgagagcacgatgacagaaccggaccacagtttcgcaaccgaaagggcagaagc
tataacagaggtggtatgcatgaccgcactcgcagagaccgccagcgaggaggtcactcc
agtgactttggtggtcctggaccacggtccaggcttgacgacaatgatggagatgtaacg
atgagtgatagtaacactcaggatggctcccagtacagatcacacccatatcgcccacct
catcggaaaggagatgtgcgatttagagacaggcgtccgggaaaaggaggaggtggaaga
ggaggtggtggcttcagagacagaggtggagggggcggcagtggaggaggaggaaaaaac
cagtcgggctggtctaaagttacaataccacatggaaggaaatatgacaagaaatggtta
ctgacagctcttcagaacatctgttcagttacctttacacctgtacagttccatgttgac
cacgatagggctcatttctatttggatgatgcccctgctgccattgctttacgtaaatgt
tctcacaagatcacagactcggatggttacaaggtggaggttcacgtcaacccacatgct
ccaccagccttccttgcatctgacttgaagtctgaacatttggagcacctaaagcaatgc
atgggaaaacgctttgatgcctcccaacagtcgcttgacttaaacaacatccggacagac
ccagacctggtgtcccaaaaaattgaagtcaccttgaatcggaagactcacatggaagct
gtcatatcggttattgcaggacacattccagagctggcctgcttaaacctgagcaacaac
cgcattcacaaactggaggaacttgctgaattggtcacaaaggtgcctaatctgaaagtt
cttaacctctcccacaatgagctaaagtcagaccgagagctggacaagttgaaaggcctg
aaactggtggagctgtggctaaacaggaacccactgtgtagctacttcaaggaccaggct
ttatacatcagtgctgtgcggcagaggtttccccggcttctgaaactggatggtcaagat
ctacccccacctattggatttgatgtagaaacaccaaccacaattcctccttgcaagggc
agctgttttggatctgaagaaatcaaggctcccattcttggcttcttgcaacagtactac
agtatatatgactctggtgacaggcagcctcttctggatgcttaccatgacggagcatcg
ttatcccttacaacgccttactctacccagaacccctccaggagcagtctgggagagtat
cacaaagacactcgaaacctgaaaaggatcaaagacaccacgatgagatttcgattgctg
aagcacacacgactgaatgtggtggctttcctcaacgagttgcccaaaacgcagcatgac
atcgcctcctttactatcgatgtaaacacctgcacaaacacgctactgtcattcacagtg
agtggtgtcttcaaagaagttgctgttgatggtaaatcccgagactccaccatggccttt
tctcgggtttttgtcacagtcccagcagggggttctggtttgtgcatcgtgaacgaccag
attttcatccgcatggccacaacagaggagatccgccgtgcctttgtggctcctgcccca
actccatcttctagccctgtacccactctcactgcaccacagcaggagatgctgactgcc
ttctcacagaagtctggcatgaacctggaatggtcccaaaaatgtttgcaagataatgaa
tgggatttcaaccgagctgcgcaaatcttcactcaattaaagactgaaggccagatccct
gatgtggcgttcatcaaatga
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