Solea solea (common sole): 131473075
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Entry
131473075 CDS
T10853
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ssoe Solea solea (common sole)
Pathway
ssoe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131473075 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssoe03019
]
131473075 (clp1)
Enzymes [BR:
ssoe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
131473075 (clp1)
Messenger RNA biogenesis [BR:
ssoe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
131473075 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
TniB
ATP_bind_1
MMR_HSR1
AAA_22
Sigma54_activat
nSTAND3
AAA_16
CbiA
Motif
Other DBs
NCBI-GeneID:
131473075
NCBI-ProteinID:
XP_058506579
LinkDB
All DBs
Position
14:complement(16012577..16015903)
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AA seq
441 aa
AA seq
DB search
MATEGVEKVSEDAPATGKVSTRFDLEKETELRFEVEAGEAVEQVDLELLTGMAEVFGSEL
NRNKKYVFGAGSKIAVFTWQGCSVNLYGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAER
ENERGPRVMVVGPTDVGKSTVCRMLLNYSVRLGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCIIN
TCGWVKGSGYQALVHCASAFQVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRDTRDEKIREYFYGFRGLSYYPFSYEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHVLSVSSAEDGEEGARKGIVESPVCGFIVVTNVDTQTQVMKVLSP
APRPLPRHTLLIMDIRFMDMK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgagggtgtggaaaaagtgagtgaagatgctccagcaaccgggaaggtcagc
accagatttgacctggagaaagagacggaacttaggtttgaggtggaggcaggagaagca
gtagaacaagttgacctggagctcctcacaggaatggctgaggtgtttgggtcagagctg
aaccgcaacaaaaagtacgtatttggagcgggctcaaagattgcagttttcacctggcaa
ggatgcagtgtcaacctttatggaaaaccagaggtggcttatgtgtccaaggatactccc
atgctgctttatctgaacacacatgctgcgctggaacagatgaggaaacaagcagagcgt
gagaatgagcgggggccaagggtgatggtagtgggacccacagacgtagggaagtcaaca
gtgtgtcgaatgctgttaaattattctgtaaggttgggcaggaggccaacgctagtggaa
ctggatgtgggacagagtggggtgtctgtacctgggacagtgtctgcactgtgcatcgag
cgtccagcagatgtggaggagggtttctcagtccaggctcctttggtctaccactttggc
tctactaccccaggaaccaacatcaaactttacaacaagctgacgtcatgcttagccgag
gtgttttcccagcgctgtgaggtgaacaggaaggctagtgttggaggatgtatcattaac
acctgtggctgggtgaaaggctctggataccaggctctggtccattgtgcctctgccttt
caggtggatgtggtgcttgtgctggatcacgagaggctgtacaatgaactcaaacgtgac
ctccctcactttgtgcgggttgtgctcctacccaagtccgggggggtggtggaacggtcc
aaagagtgccggcgggacacccgggatgagaagatccgagagtatttctatggcttccga
ggactgtcctactaccctttttcctatgaggttcgtttctcggatgttcgcatctataag
attggcgcaccgtccatcccagactcatgcttgccactaggaatgtctcaggatgacaca
caactaaagctggtgcctgtgacaccaggaagagacctcacgtatcatgtgctaagtgtg
agcagtgctgaggacggagaggaaggggctagaaagggcatcgtggagagtcctgtgtgt
ggctttattgtagtgacaaatgtggacacacaaactcaggtaatgaaagtgctgtcccca
gcacccagaccactgcccagacacactctgcttatcatggacatccgtttcatggacatg
aaataa
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