Solea solea (common sole): 131475641
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Entry
131475641 CDS
T10853
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ssoe Solea solea (common sole)
Pathway
ssoe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssoe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131475641 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssoe03019
]
131475641 (xab2)
03041 Spliceosome [BR:
ssoe03041
]
131475641 (xab2)
Messenger RNA biogenesis [BR:
ssoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
131475641 (xab2)
Spliceosome [BR:
ssoe03041
]
Complex B
Other components
Prp19-related factors
131475641 (xab2)
Complex C
131475641 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_8
TPR_2
TPR_15
ARM_TT21_C
ARM_TT21
TPR_16
TPR_1
SNAP
Motif
Other DBs
NCBI-GeneID:
131475641
NCBI-ProteinID:
XP_058509874
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Position
16:complement(12341066..12349193)
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AA seq
852 aa
AA seq
DB search
MPPLNGKGDVMFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSTLNIIYERALRELP
GSYKLWYSYLRERRKQVKGKCISDPGFEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
MTRSRRTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEIGQDEDEDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGETELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETVERHHMFNIYIKRAAEIYGVTYTRAIYQKSIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQAWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMTSQMMKATSSATGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEK
DKPKPKEKILFVRSDTSRSELAQLSKQANPDEIDIDDDDDDDEDDNKDQGPEEVQLEQKS
VPTAVFGGLKDD
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgcctccattaaacggaaaaggcgatgttatgtttgaagaagatgatctaccctatgaa
gaggagatcattcggaacccatactcagtcaagtgctggatgcgatacattgaattcaaa
cagaatggagccaaatccaccctgaacataatatatgaacgggctctgagagaactgcct
ggcagttacaagctgtggtacagttatctgagagagagacggaaacaagtcaaagggaaa
tgcatctctgatccaggctttgaagaggtcaataattgccatgaaagggcattggtgttc
atgcataagatgcctagaatatggctcgattactgccagttccttgtgtctcagtgcaag
atgacacgaagtcggcggacatttgaccgtgcacttagagctcttcctgttacacagcat
ccacgcatctggcctctttatctccgctttgtccgtaacctgcccctacccgaaactgcc
atccgggtgtatcgcaggtatctcaagctttctccagagaatgcagaggaatacattgac
tacttacgatctgttggccgtttggatgaagcagctgtccgactagcagctgttgtcaat
gatgaaaactttgtgtccaaagagggcaagtccaactatcaactgtggcatgaactatgt
gacctgatctcccagaaccctgataaggtgacctccttgaatgtaggagccatcatccga
ggaggcctcactcgctttacagaccaacttggaaaactttggtgctctttagccgactat
tacatcaggagtggtcactttgagaaagcccgtgatgtgtatgaggaagccattcttaca
gtggtcacagtaagggatttcacacaagtgtttgatagctatgcccaatttgaggagagc
atgattgctgccaagatggagaccactgctgagattgggcaggatgaagatgaagatata
gacctggagctcagactggcccgctttgagcagctgatagctcggcgacccctcctcttg
aacagtgtactactgaggcagaacccccataatgtacatgagtggcacaagagggtaaaa
ctgtatgagggtaatccacggcagattatcaacacttacactgaagcagtgcagactgtg
gatccaatgaaggccacagggaagcctcactctctctgggtttcctttgccaaattctac
gaagaaaatgagcagttggatgatgccaggacaatcttcgagaaggccaccaaggtgaac
tacaagcaggtggatgaccttgctgcagtgtggtgtgaatatggagaaaccgagcttcgc
cacgagaactatgaacaagcactgcgcattttaaggaaagctacagccattccatctaag
aaagcagagtactttgatgcgtctgagccagtccaaaacagggtgtacaagtcattgaag
gtctggtctatgctggctgacttggaggagagtcttggcacattccagtctacaaaagca
gtttatgaccgcattattgaccttcgcattgcaacaccacagatcatcattaattatgcc
atgtttcttgaggagcacaactactttgaggaaagctttaaggcatatgagcgaggcatc
gctctcttcaggtggcctaatgtgtatgacatctggaacacttacctcaccaagttcatt
gatcgttatgggggtaagaagttggagagagcaagggatttattcgaacaagccctggat
ggctgtcctgccaagtttgccaagactatttacctgttgtatgccaaattggaggaggag
tatggattggcaaggcatgccatggctgtatatgaaagagcgacacaggcagtagaaaca
gtggagagacatcacatgtttaatatctacatcaagagagcggctgaaatttatggtgtc
acctataccagagcaatttaccagaaatctattgaggtccttccggatgagcatgcgagg
gacatgtgccttcgatttgctgacatggagagtaaactgggtgagattgatcgggccaga
gcaatctactcctactgctcccagatctgtgacccaagggtgacagctaatttctggcaa
gcctggaaagaatttgaaatccgccacggaaatgaggacaccattagagaaatgctgagg
atcaaacgcagtgtccaggccacatataatacccaggtcaactttatgacctctcagatg
atgaaggccacatcaagcgccacaggcacagtgtcagatcttgctcctggccagatggga
attgatgacatgaagatgttggagcagaaagctcaacagcttgctgcagaagctgaaaag
gacaaacccaagcccaaagagaagattctgtttgttaggagtgacacttctcgcagtgag
ttggcccagctttccaaacaagccaatcctgatgagatcgacattgatgatgatgatgac
gatgacgaggacgacaacaaagaccaaggaccggaagaggtgcagcttgaacagaagagt
gtccctacagctgtctttggaggcctgaaagatgactga
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