Streptomyces malaysiensis HNM0141: I1A49_24750
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Entry
I1A49_24750 CDS
T07406
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ssoi
Streptomyces malaysiensis HNM0141
Brite
KEGG Orthology (KO) [BR:
ssoi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssoi03019
]
I1A49_24750 (hrpA)
Enzymes [BR:
ssoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
I1A49_24750 (hrpA)
Messenger RNA biogenesis [BR:
ssoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
I1A49_24750 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
WHD_HA2
nSTAND3
NACHT
ResIII
SLFN-g3_helicase
T2SSE
AAA_16
AAA_30
AAA_11
nSTAND_NTPase5
SRP54
NTPase_1
PhoH
TsaE
Motif
Other DBs
NCBI-ProteinID:
QPI57690
UniProt:
A0ABX6W8B3
LinkDB
All DBs
Position
complement(6104737..6108735)
Genome browser
AA seq
1332 aa
AA seq
DB search
MSTTPAPALPALLERLPELMLRDQQRLGRRLDGARRIRKPEARAAVLGEVAEEITRAELR
VADRRAAVPAVTYPEELPVSQKRDAILEAVRDHQVVIVAGETGSGKTTQIPKICMELGRG
VKGLIGHTQPRRIAARTVAERIAEELRSPLGESVGWKVRFTDQVSQDTHVKLMTDGILLA
EIQTDRELRQYDTIIIDEAHERSLNIDFLLGYLAQLLPRRPDLKVVITSATIDPERFSRH
FGDAPIVEVSGRTYPVEVRYRPLLEEGGEDSDRDQITAICDAVDELQAEGPGDILVFLSG
EREIRDTADALNKKKLPVTEVLPLYARLSHAEQHRVFQRHTGRRIVLATNVAETSLTVPG
IRYVIDPGTARISRYSHRTKVQRLPIEPISQASANQRKGRCGRTSDGICIRLYSEDDFLT
RPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDRRNIKDGIQLLEELHALDGKQ
KDPRKRLTQVGRKLAQLPVDPRLARMVLEADRNGCVREVMVIAAALSIQDPRERPSDKQQ
QADQQHARFKDESSDFLAFLNLWKYVRERQKELSSSAFRRMCRHEYLNYLRIREWQDIYS
QLRTVAKTMDIHMSEQDAAPDRVHQSLLAGLLSHIGLRSTGVEGGKDSGKDAGRNAGREG
GKNTAKNEYVGARSAKFAVFPGSALFKKPPHWVMSAELVETSRLWARVNAKIEPEWIEPL
AQHLVKRTYSEPHWEQKQAAVMAFERVTLYGVPIVAQRKVNYGRIDPETSRDLFIRNALV
EGDWRTHHQFFLDNRKLLGEVEELEHRARRRDILVDDETLFDFYDQRIPEHVVSGAHFDS
WWKHKRREEPELLNFEKSMLINERAQDVTKDAYPDSWRQGKLKFRVTYQFEPGADADGVT
VHIPLQVLNQVTADGFDWQIPGLREDLVTELIRSLPKPVRRHYVPAPNYAKRFLESAVPL
QGPLTAALERELHRMVGVRIEPEDWDLAKVPDHLKITFRVVDERRRKLAEDKDLEALKLR
LRPKTRAAISKAFESSKEAVGIEQRGGLTRWTVGTLPRTFETRRGGQPVKAYPALVDEGA
SVAVRLFDTEAEQREAMWRGTRRLILLQLPSNPAKFVQGKLSNQAKLALSSSPHGSVQAL
FDDCVSAAADRLIATRGGPAWDEESFRKLFDAVRTDIMDATLDTVRKVQEVLAAWQSCER
RLKATSSPVLLPSLTDIREQLSELITPGFVTAHGVRRLPDLMRYLVAVDRRLQQLPGNAD
RDRARMAKVREMRDEYAWLLEQFRPGRPVPQEALEIRWMIEELRVSYFAHALGTAYPVSD
KRIVKAIDAAAP
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccacgcctgcccccgccctgcccgccctgctggagcggctgcccgagctgatg
ctgcgcgaccagcagcggctggggcgccgactcgacggtgcgcgccggatccgtaaaccc
gaggcccgagcggccgtgctcggcgaggtcgccgaggagatcacgcgtgccgagctgcgg
gtcgcggaccgccgcgccgccgtaccggccgtcacctatccggaagagctgccggtcagc
cagaagagggacgcgatcctcgaggccgtccgggatcaccaggtggtgatcgtcgcgggt
gagaccggctccgggaagaccacccagattccgaagatctgtatggagctggggcgcggc
gtcaagggccttatcggccatacgcagccgcgccgtatcgcggcccgcaccgtggccgag
cgcatcgccgaggagctgcggtcgccgctgggcgagtccgtcggctggaaggtccgcttc
accgaccaggtgagccaggacacccacgtcaagctgatgaccgacggcattctgctcgcc
gagatccagaccgaccgcgagctgcgccagtacgacacgatcatcatcgacgaggcccat
gagcgcagcctcaacatcgacttcctgctcggctatctggcccagctgctgccccgccgc
cccgacctcaaggtcgtgatcacctccgccaccatcgaccccgagcgcttctcccgccat
ttcggcgacgcgccgatcgtcgaggtcagcgggcgtacgtatccggtcgaggtgcgctac
cgcccgctgctggaggagggcggcgaggacagcgaccgcgaccagatcaccgcgatctgc
gacgcggtcgacgagctccaggccgagggacccggcgacatcctggtcttcctctccggc
gagcgggagatccgcgacaccgccgacgcgctgaacaagaagaagctcccggtcaccgag
gtgcttccgctgtacgcccggctgtcgcacgccgagcagcaccgggttttccaaagacac
accggccgccggatcgtgctggcgacgaacgtcgccgagacctcgctgaccgtccccggt
atccgctatgtgatcgacccgggcaccgcccggatctcccgctacagccatcgcaccaag
gtgcagcggctgcccatcgagccgatctcgcaggccagcgccaatcagcgcaagggccgc
tgcggccgtaccagcgacggcatctgcatccggctgtactccgaggacgacttcctcacc
cgcccggagttcaccgacgccgagatcctgcggaccaacctggcctccgtcatcctccag
atgaccgcggccggcctcggcgacatcgagaagttccccttcatcgacccgccggaccgc
cgcaacatcaaggacggcatccagctcctggaggagctgcacgccctggacggcaagcag
aaggacccgcgcaagcggctcacccaggtcggccggaagctggcccagctgccggtggac
ccgcggctggcccggatggtgctggaggcggaccgcaacggctgcgtccgtgaggtcatg
gtgatcgcggcggcgctgtccatccaggacccgcgcgagcgcccctcggacaagcagcag
caggcggatcagcagcacgcccgcttcaaggacgagtccagcgacttcctggccttcctc
aatctgtggaagtacgtccgggagcggcagaaggagctgtcctcctcggccttccgccgg
atgtgccgccatgagtacctcaactacctgcgcatacgcgaatggcaggacatctacagc
cagctgcgcacggtcgccaagaccatggacatccatatgtccgagcaggacgcggcgccc
gatcgcgtccatcagtcgctgctggccggtctgctgtcgcacatcggcctcaggagcacc
ggggtggagggcgggaaggacagtgggaaggacgccgggcggaacgccgggcgggagggt
gggaagaacacagccaagaacgagtacgtgggcgctcggagcgccaagttcgcggtcttc
cccggctcggcgctgttcaagaagccgccgcactgggtgatgtcggcggagctggtggag
acctcccggctgtgggcgcgggtcaacgcgaagatcgagccggagtggatcgagccgctc
gcccagcacctggtcaaacgcacctacagcgaaccgcactgggagcagaagcaggccgcg
gtgatggcgtttgagcgggtcacgctctacggggtgccgatcgtcgcccagcggaaggtc
aactacggccggatcgaccccgagaccagccgcgatctgttcatccgcaacgccctggtg
gagggcgactggcgcacccaccaccagttcttcctcgacaaccgcaagctgctgggcgag
gtcgaggagctggagcaccgggcccggcgccgcgacatcctcgtggacgacgagacgctc
ttcgacttctacgaccagcggatccccgagcatgtggtgtccggtgcccacttcgactcc
tggtggaagcacaagcgacgcgaagagccggagcttctcaacttcgagaagtcgatgctc
atcaacgagcgggcgcaggacgtcaccaaggacgcctatccggactcctggcgccagggg
aagctcaagttccgggtgacctaccagttcgagccgggggcggacgcggacggtgtgacc
gtccacatcccgctccaggtgctgaatcaggtcaccgcggacggattcgactggcagatt
ccggggctgcgcgaggatctggtcaccgagctgatccgctcgctgcccaaaccggtccgc
cggcactacgtcccggcgcccaactacgccaagcgcttcctggaaagcgctgtccccctc
caggggccgctgacggcggcgctggagcgcgagctccaccggatggtgggcgtacggatc
gagccggaggactgggacctggcgaaggtccccgaccatctgaagatcaccttccgggtg
gtggacgagcggcgccgcaagctggccgaggacaaggacctggaggcgctgaagctgcgg
ctgcggccgaagacgcgggccgcgatctccaaggcgttcgagtcctccaaggaggccgtg
gggatcgagcagcgcggcgggctgacccggtggacggtcgggacgctgccgcgcaccttc
gagacgcgccgcggcggccagccggtcaaggcgtatccggcgctggtcgacgagggcgct
tcggtggccgtacggctcttcgacaccgaggccgagcaacgggaggccatgtggcgcggg
acgcgccggctgatcctgctccagctgccgtccaaccccgccaagttcgtccagggcaag
ctctccaaccaggccaagctggcgctctccagcagcccgcacggcagtgtgcaggcgctc
ttcgacgactgcgtgtccgcggcggccgaccggctgatcgcgacccgtggcggcccggcc
tgggacgaggagtcgttccgcaagctcttcgacgccgtgcgcaccgacatcatggacgcc
acgctggacacggtccgcaaggtccaggaggtgctggccgcctggcagtcgtgcgagcgg
cggctcaaggccaccagcagcccggtgctgctgccgtccctcacggacatccgggagcag
ctctcggagctcatcacaccgggtttcgtgaccgcccacggcgtacggcggctgccggac
ctcatgcgctatctggtggccgtggaccggcggctccagcagcttccgggcaacgccgac
cgggaccgcgcccggatggcgaaggtgcgggagatgcgggacgagtacgcctggctgctg
gagcagttccggcccgggcgcccggtgccccaggaggcgctggagatccgctggatgatc
gaggagctgcgggtcagctacttcgcgcacgccctcggcacggcctatccggtgtccgac
aagcgcatcgtcaaggccatcgacgcggcggcgccgtaa
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