Streptomyces malaysiensis HNM0141: I1A49_25670
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Entry
I1A49_25670 CDS
T07406
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ssoi
Streptomyces malaysiensis HNM0141
Brite
KEGG Orthology (KO) [BR:
ssoi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssoi03016
]
I1A49_25670
Enzymes [BR:
ssoi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
I1A49_25670
Transfer RNA biogenesis [BR:
ssoi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
I1A49_25670
Prokaryotic type
tRNA splicing ligases
I1A49_25670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QPI57845
UniProt:
A0ABX6WB50
LinkDB
All DBs
Position
6326056..6327249
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AA seq
397 aa
AA seq
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MSYVEVPGARVPIRMWTDPSTVEGVAMEQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMQGAVCPAAVGVDIGCGMSAVKTSLTADDLPGDLSRLRSKIEQTIPVGRGMHDDPVDPG
RLHAFPTGGWDDFWSRFGGVAEAVKFRQERAVKQMGSLGSGNHFIEFCLDDEGSAWLMLH
SGSRNIGKELAEYHIGEARKLPHNQDLVDRDLAVFIADTPQMAAYRHDLFWAQEYAKYNR
AIMMALFQDVVRKEFKKARPVFEPVISCHHNYVAEERYEHMDLLVTRKGAIRAGSGDYGI
IPGSMGTGSYIVRGLGNEASFNSASHGAGRKMSRNAAKKRFSTRDLEEQTRGVECRKDSG
VVDEIPGAYKPIEKVIDQQRDLVEVVARLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtcgaggtgcccggcgctcgggtgccgatccggatgtggaccgacccttcg
acggtcgagggcgtggccatggagcagctgcgcaatgtggccacgctgccctggatcaag
ggcctcgccgtgatgccggatgtgcattacgggaagggtgccacggtcggctcggtgatc
gcgatgcagggcgcggtgtgcccggccgcggtgggtgtggacatcggctgcgggatgtcg
gcggtcaagacgtcgctgaccgcggacgaccttccgggggatctctcgcggctgcggtcc
aagatcgagcagacgatcccggtggggcgcggaatgcacgacgacccggtggacccgggg
cggctgcacgcgttccccacggggggctgggacgacttctggagccggttcgggggagtg
gccgaagcggtcaagttccgccaggagcgggccgtcaagcagatgggttcgctcgggtcc
ggcaaccacttcatcgagttctgtctcgatgacgagggttcggcctggctgatgctgcac
tccggctcccgcaacatcggcaaggagctggccgagtaccacatcggcgaggcccggaag
ctgccgcacaaccaggatctggtcgaccgcgacctggccgtcttcatcgcggacaccccg
cagatggcggcgtaccggcacgatctgttctgggcgcaggagtacgcgaagtacaaccgc
gcgatcatgatggcgctcttccaggacgtggtgcgcaaggagttcaagaaggcccgcccg
gtcttcgagccggtgatcagttgccaccacaactacgtcgccgaggagcgctacgagcac
atggaccttctcgtgacccgtaagggcgccatccgcgccggcagcggggactacgggatc
atcccgggctcgatgggcaccggttcgtacatcgtgcgcggcctggggaacgaggcgtcg
ttcaactcggcctcgcacggcgcgggccggaagatgagccgtaacgcggcgaagaagcgc
ttctcgacccgggatctggaggagcagacgcggggcgtggagtgccgtaaggactccggc
gtcgtcgacgagatccccggggcgtacaagccgatcgagaaggtcatcgaccagcagcgg
gacctcgtcgaggtggtggcgaggctcaagcaggtcgtgtgtgtgaagggctga
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