Streptomyces solisilvae: I1A49_26240
Help
Entry
I1A49_26240 CDS
T07406
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssoi
Streptomyces solisilvae
Pathway
ssoi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssoi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I1A49_26240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssoi03021
]
I1A49_26240
03400 DNA repair and recombination proteins [BR:
ssoi03400
]
I1A49_26240
Enzymes [BR:
ssoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I1A49_26240
Transcription machinery [BR:
ssoi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I1A49_26240
DNA repair and recombination proteins [BR:
ssoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I1A49_26240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
QPI57943
LinkDB
All DBs
Position
6446851..6450765
Genome browser
AA seq
1304 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDEERRTRDLPSLEAHVSVERQQIEQRRDADLEARAKKLEAD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFMGGMGAAALQKRLESFDLDEEAEKLREIIRTGKGQKKTRALKRLKVVS
AFLQTRNSPNGMVLDCIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEEREVVGE
GRSFGSTAEAIMAFDARELSLQAKIDIRFPIGTVPPRGWTPPVAEEGDDGVGGGVWQPGD
SFRLRTTLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAG
FHWATRSGVTVAISDVVVPEAKKAIITGYEAQDEKVQKQYERGLITKDERTQELIAIWTK
ATNEVAEAMNANFPKTNPIFMMVNSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASF
REGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRGLKLA
IASRGADGVLRKTEDVETSVYARCLAEDIVVDGKVLAPAGTDLGDVLIDELVRHGVETVK
TRSVLTCESAVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVA
GDDITQGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTKKLVVTPDDGSDETSYGVS
KRARLLVGEGDHVEVGEPLTVGAVNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDK
HIEIIIRQMLRRVTIIESGDAELLPGELVERSRFEGENRRVVQEGGHPASGRPQLMGITK
ASLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRV
EPTEEAKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggcctcgccaccgctgatgacatc
cgtcagtggtcccacggtgaggtcaagaagccggaaaccatcaactaccgcaccctcaag
cccgaaaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcgggaagtacaagcgcgtccgtttcaagggcatcatctgtgagcgctgcggtgtc
gaggtcacccgcgccaaggtgcgccgtgagcggatgggccacatcgaactggccgctccc
gtcacccacatctggtacttcaagggcgtgcccagccgtctgggctacctgctcgacctc
gccccgaaggacctcgagaaggtcatctacttcgccgcctacatgatcacgtgggtggac
gaggagcgccgtacgcgcgatctgccctcgctggaggcccatgtctccgtcgagcgccag
cagatcgagcagcgccgcgacgccgacctggaggcccgcgccaagaagctggaggcggac
ctcgccgagctcgaggccgagggcgccaaggccgatgtgcgccgtaaggtgcgcgagggc
gccgagcgcgagatgaagcagctgcgcgaccgtgcccagcgcgagatcgaccgtctcgac
gaggtgtggaaccgcttcaagaacctcaaggtccaggacctggagggcgatgagctgctc
taccgcgagctgcgtgaccgcttcggcacgtacttcatgggcggcatgggcgcggccgcg
ctccagaagcgcctggagtccttcgacctcgacgaggaggccgagaagctccgcgagatc
atccggaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gccttcctccagacccgcaacagccccaacggcatggtgctggactgcatcccggtgatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtgatcaaccggaacaaccgcctcaagcgtctgctcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgcccggtcaccggtcccggtaaccgtccgctgaag
tccctcagcgacatgctgaagggcaagcagggccggttccgtcagaacctgctcggtaag
cgagtcgactactcggcccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcggccgc
acggtcgtgtacgacgtgctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcgccgaccctgcaccgcctcggtatccaggcgttcgagccgcagctggtcgagggcaag
gccattcagattcacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgtccggtgaccatgccgacccaggac
atggtgctgggcctgttcttcctcaccaccgacgaggaggagcgcgaggtcgtcggcgag
ggccgttccttcggctccaccgccgaggcgatcatggcgttcgacgcccgggagctctcg
ctccaggcgaagatcgacatccgcttcccgatcggcacggttccgccccgtggctggacc
ccgccggtggccgaggaaggggacgacggcgtcggcggcggtgtctggcagcccggtgac
agcttccggctgcgcaccacgctgggccgcgcgctcttcaacgagctgctgcccgaggac
tacccgttcgtcgactactcggtgggcaagaagcagctctccgagatcgtcaacgacctc
gccgagcgctaccccaaggtcatcgtcgcggcgacgctggacaacctgaaggcggccggt
ttccactgggccacccgctccggtgtcaccgtcgccatctccgacgtggtcgtgcccgag
gccaagaaggccatcatcacgggctacgaggcgcaggacgagaaggtccagaagcagtac
gagcgcggtctgatcaccaaggacgagcgcacccaggagctgatcgcgatctggaccaag
gcgaccaacgaggtcgccgaggcgatgaacgcgaacttcccgaagaccaacccgatcttc
atgatggtcaactcgggcgcgcgcggaaacatgatgcagatgcgtcagatcgccggtatg
cgtggtctggtgtccaacgcgaagaacgagaccatcccgcggcccatcaaggcgtcgttc
cgtgagggtctctccgtgctggagtacttcatctccacccacggtgcccgtaagggtctc
gccgacaccgccctgcgtaccgccgactcgggttacctgacccgtcgtctggtggacgtc
tcccaggacgtgatcattcgcgaggaggactgcggcaccgaccgcggcctgaagctcgcg
atcgcgtccaggggcgcggacggtgtgctgcgcaagacggaggacgtcgagaccagcgtg
tacgcgcgctgcctcgccgaggacatcgtcgtggacgggaaggtcctggccccggccggt
accgacctgggcgatgtgctcatcgacgagctggtccgccacggcgtggagacggtcaag
acccgttcggtgctcacctgcgagtccgccgtcggcacctgcgccatgtgctacggccgc
tcgctggcgaccggcaagctggtggacatcggcgaggcggtcggcatcatcgccgcccag
tccatcggtgagcccggcacccagctgacgatgcgtaccttccacaccggtggtgtggcc
ggtgacgacatcacccagggtctgccgcgtgtcgtcgagctcttcgaggcccgtacgccc
aagggtgtcgccccgatctcggaggcggccggccgcgtccggatcgaggagaccgagaag
accaagaagctcgtcgtcaccccggacgacggctccgacgagacgtcctacggcgtctcc
aagcgagcccgtctgctggtgggcgagggcgaccacgtcgaggtcggcgagccgctgacc
gtgggtgccgtcaacccgcacgacgtgctgcgcatcctcggccagcgcgccgttcaggtg
cacctggtgggcgaggtccagaaggtctacaactcgcagggtgtgtcgatccacgacaag
cacatcgagatcatcatccggcagatgctgcgccgggtgacgatcatcgagtccggcgac
gctgagctgctgccgggcgagctcgtggagcgctcgcgcttcgagggtgagaaccgtcgt
gtggtccaggaaggcggccacccggcctccggccgtccgcagctgatgggtatcaccaag
gcatcgctggcgaccgagtcctggctgtcggcggcgtccttccaggagacgacccgggtg
ctcaccgacgcggcgatcaacgccaagtcggactccctgatcggcctcaaggagaacgtg
atcatcggtaagctcatcccggccggtacgggcctgtcccgctaccgcaacatccgggtc
gagccgaccgaggaggcgaaggccgcgatgtactcggccgtcggttacgacgacatcgac
tactcgcccttcggcacgggctccggccaggcggttccgctggaggactacgactacggt
ccgtacaaccagtaa
DBGET
integrated database retrieval system
