Streptomyces malaysiensis HNM0141: I1A49_30180
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Entry
I1A49_30180 CDS
T07406
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ssoi
Streptomyces malaysiensis HNM0141
Pathway
ssoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I1A49_30180 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssoi03021
]
I1A49_30180 (rho)
03019 Messenger RNA biogenesis [BR:
ssoi03019
]
I1A49_30180 (rho)
Transcription machinery [BR:
ssoi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
I1A49_30180 (rho)
Messenger RNA biogenesis [BR:
ssoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
I1A49_30180 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA
AAA_25
NACHT
VAD1-2
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
QPI58602
UniProt:
A0ABX6WAY0
LinkDB
All DBs
Position
7319128..7321260
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AA seq
710 aa
AA seq
DB search
MSDTTDLMGVNASGTSDSGVGNNAPATDAPAPATGAATGAAPRRRRSGTGLDAMVLAELQ
QLASSLGIRGTARMRKGQLIEVIKEKQAAGSGSAQGSESTPSAAEGVTKPKRRTTSRART
GDDGEEKTGSAKSSKSAGKAEKADKADAEEKAVAQQQIEIPGQPGEPAGDEQPAGERRRR
RATAPATSPDSGGTATAVETKAEARTDVSAKTETRTEPKGDGKAEAAVDTAEGKGARSGD
RQERGQKGDRRERQRDRGDRDRGDRRGKGEDGQQGGGRQQRDGRGQGQQRAEESDDDFDG
GRRGRRGRYRDRRGRRGRDDFGNEPQVSEDDVLIPVAGILDILDNYAFIRTSGYLPGPND
VYVSLAQVRKNGLRKGDHVTGAVRQPREGERREKFNALVRLDSVNGMAPETGRGRPEFGK
LTPLYPQDRLRLETEAGGLTTRIIDLVAPIGKGQRGLIVAPPKTGKTMIMQAIANAITRN
SPECHLMVVLVDERPEEVTDMQRSVKGEVISSTFDRPAEDHTTVAELAIERAKRLVELGH
DVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKKFFGAARNIEDGGSLTILAT
ALVETGSRMDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVDPSSTRKEEILLAPEELN
IVWKLRRVLHALDSQQAIELLLDKMKQTKSNAEFLMQIAKTTPTPGNNGD
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgtgaacgcctccggcacctccgacagcggtgtc
ggcaacaacgcgcccgccacggacgctcccgcgcccgccaccggtgctgccacgggcgct
gccccgcggcgacgccgctcgggcaccggcctcgacgccatggtcctggccgagctccag
cagctcgcctcgagccttggcatcaggggcaccgcgcggatgcgcaaaggccagctgatc
gaggtcatcaaggagaagcaggccgcgggctccggctccgcccagggctccgagagcacc
ccgtccgccgcggagggggtgaccaagccgaagcgccgcaccacctcccgggcccgtacg
ggcgacgacggcgaggagaagaccggcagcgccaagtcctcgaagtccgccgggaaggcg
gagaaggccgacaaggccgacgccgaggagaaggccgtcgcccagcagcagatcgagatc
cccggccagcccggtgagcccgccggcgatgagcagccggccggtgagcgccgccgccgt
cgcgccaccgcgcctgccaccagccccgattccgggggcacggccaccgctgtcgagacc
aaggcggaagcgcgtaccgacgtctccgccaagaccgagaccaggaccgagcccaagggc
gacggcaaggccgaggccgccgtcgacaccgccgagggcaagggcgccaggagcggtgac
cgccaggagcgcggccagaagggcgaccgccgggagcgtcagcgcgaccgtggcgaccgc
gaccgcggcgaccgccgtggcaagggcgaggacggccagcagggcggcggccgtcagcag
cgcgacgggcgcggccagggccagcagcgcgccgaggagagcgacgacgacttcgacggc
gggcgccgcgggcgccgcggccgctaccgcgaccgccgtggccgccgtggccgcgacgac
ttcggcaatgagccgcaggtgtccgaggacgatgtgctgatccccgtcgcgggcatcctc
gacatcctcgacaactacgcgttcatccgcacctccggctacctcccgggcccgaacgac
gtctatgtctcgctcgcccaggtccgcaagaacggtctgcgcaagggcgaccacgtcacc
ggcgcggtgcgccagccccgcgagggcgagcgccgcgagaagttcaacgcgctggtgcgg
ctggactcggtcaacggcatggcgcccgaaaccgggcgcgggcggccggagttcggaaag
ctgacgccgctttacccgcaggaccggctgcgcctcgagaccgaggccggcgggctgacg
acccggatcatcgacctggtcgcgccgatcggcaaggggcagcgcggtctgatcgtggcc
ccgccgaagaccggtaagaccatgatcatgcaggcgatcgccaacgcgatcacccgcaac
agccccgagtgccatctgatggtcgtcctcgtcgacgagcggccggaagaggtcaccgac
atgcagcggtcggtcaagggcgaggtcatctcctcgaccttcgaccgcccggccgaggac
cacaccaccgtcgcggagctggcgatcgagcgggccaagcgcctggtcgagctgggccat
gacgtggtcgtcctgctggactcgatcacccgcctgggccgcgcctacaacctggcggcg
ccggcctccggccgcatcctgtccggtggtgtcgactcgaccgcgctctacccgccgaag
aagttcttcggcgccgcgcgcaacatcgaggacggcggctcgctgaccatcctggccacc
gcgctggtcgagaccggctcgcgcatggacgaggtgatcttcgaggagttcaagggcacc
ggcaacatggagctcaagctggaccggaagctcgccgacaagcgcatcttcccggcggtg
gacgtcgacccgtccagcacccgcaaggaggagatcctgctggcgccggaggagctgaac
atcgtctggaagctccgccgggtgctgcacgcgctcgactcccagcaggccatcgagctg
ctgctggacaagatgaagcagacgaagtcgaacgccgagttcctgatgcagatcgccaag
accacgcccactccgggcaacaacggcgactga
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